Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012144.1 Corchorus capsularis cultivar CVL-1 contig12165, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8228
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31


Found at i:869 original size:6 final size:6

Alignment explanation


    Indices: 858--884  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

        848 TTATAGATTA

                                           
        858 TTTTAT TTTTAT TTTTAT TTTTAT TTT
          1 TTTTAT TTTTAT TTTTAT TTTTAT TTT

        885 CTATGTTAGG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85


Consensus pattern (6 bp):   
TTTTAT

Found at i:4731 original size:12 final size:12

Alignment explanation


    Indices: 4716--4741  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       4706 TCGCATGCGA

                        
       4716 TGGCCGGTCATG
          1 TGGCCGGTCATG

                        
       4728 TGGCCGGTCATG
          1 TGGCCGGTCATG

              
       4740 TG
          1 TG

       4742 CGGCTTCTCC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.08, C:0.23, G:0.42, T:0.27


Consensus pattern (12 bp):   
TGGCCGGTCATG
Done.