Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012148.1 Corchorus capsularis cultivar CVL-1 contig12169, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85632

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10362--10392
12
2.6
12
94
0
53
48
0
3
48
1.17
28054--28188
45
3.0
45
100
0
270
37
20
24
17
1.93
28774--29137
186
2.0
186
97
0
683
36
22
6
35
1.79
30729--30760
16
2.0
16
100
0
64
50
18
0
31
1.48
33093--33131
6
6.5
6
96
0
60
79
0
20
0
0.73
33801--33841
3
13.7
3
100
0
82
0
31
0
68
0.90
39692--39773
24
3.3
23
78
18
94
53
9
13
23
1.69
40599--40751
73
2.1
72
86
2
207
34
17
17
30
1.93
43200--43260
31
2.0
31
93
0
104
39
6
18
36
1.76
52281--52492
72
3.0
72
92
3
333
33
11
28
25
1.91
57640--57673
17
2.0
17
100
0
68
29
0
23
47
1.52
75658--75727
34
2.1
34
94
0
122
40
22
15
21
1.91
77418--77455
7
5.4
7
87
6
51
0
18
0
81
0.69
77418--77455
14
2.7
14
92
8
60
0
18
0
81
0.69
78736--78894
60
2.7
60
95
2
275
36
18
18
27
1.94
78796--78961
31
5.4
31
78
8
178
39
18
16
24
1.91
78767--78864
29
3.3
29
68
16
92
35
19
18
26
1.95
78992--79156
31
5.5
31
71
16
157
26
20
20
32
1.97
78988--79157
60
2.8
60
90
0
286
27
20
20
31
1.97
82960--83121
88
1.9
88
92
1
272
21
16
20
41
1.89
84124--84169
23
2.0
23
95
0
83
26
19
21
32
1.97
84962--85319
125
2.9
124
81
2
396
33
15
15
35
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85432--85504
29
2.4
32
88
6
107
38
8
19
34
1.81

Tables:   1

The End!