Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001215.1 Corchorus capsularis cultivar CVL-1 contig01215, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 624

Length: 1040
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33


Found at i:911 original size:27 final size:27

Alignment explanation


    Indices: 873--1040  Score: 255
    Period size: 27  Copynumber: 6.0  Consensus size: 27

        863 TCTGCAAGAA

                                       
        873 CTCCGAATCATTCTCTTGAAGCTCATC
          1 CTCCGAATCATTCTCTTGAAGCTCATC

                                       
        900 CTCCGAATCATTCTCTTGAAGCTCATC
          1 CTCCGAATCATTCTCTTGAAGCTCATC

                                       
        927 CTCCGAATCATTCTCTTGAAGCTCATC
          1 CTCCGAATCATTCTCTTGAAGCTCATC

                            *    *            
        954 CTCCGAATCATAAATGATCCGCTGAAGCTCATCC
          1 CTCCGAATCAT---T-CT-C-TTGAAGCTCAT-C

                                       
        988 CTCCGAATCATTCTCTTGAAGCTCATC
          1 CTCCGAATCATTCTCTTGAAGCTCATC

                                      
       1015 CTCCGAATCATTCTCTTGAAGCTCAT
          1 CTCCGAATCATTCTCTTGAAGCTCAT


Statistics
Matches: 130,  Mismatches: 4, Indels: 14
        0.88            0.03        0.09

Matches are distributed among these distances:
  27   92  0.71
  28   10  0.08
  29    1  0.01
  30    2  0.02
  31    2  0.02
  32    1  0.01
  33   10  0.08
  34   12  0.09

ACGTcount: A:0.24, C:0.33, G:0.12, T:0.32


Consensus pattern (27 bp):   
CTCCGAATCATTCTCTTGAAGCTCATC
Done.