Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012150.1 Corchorus capsularis cultivar CVL-1 contig12171, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68404

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1068--1128
28
2.2
28
85
5
79
39
4
21
34
1.75
1079--1132
28
1.9
28
92
7
92
37
3
22
37
1.72
1773--1797
13
1.9
13
100
0
50
56
0
0
44
0.99
2003--2037
5
7.2
5
87
6
54
42
0
0
57
0.99
2329--2414
38
2.3
38
83
0
109
23
24
17
34
1.96
2434--2495
32
1.9
32
96
0
115
25
20
16
37
1.93
2817--2889
37
2.0
37
91
0
119
30
21
9
38
1.86
4485--4541
29
1.9
30
85
3
80
22
24
15
36
1.94
5140--5284
72
2.0
72
85
2
193
42
24
7
25
1.81
6181--6205
12
2.1
12
100
0
50
16
44
8
32
1.76
8901--8934
16
2.1
16
100
0
68
35
23
8
32
1.86
17309--17352
23
1.9
23
82
17
56
54
6
6
31
1.53
21315--21369
26
2.1
26
86
3
74
20
14
36
29
1.92
25937--25997
30
2.0
30
87
0
86
24
18
18
39
1.92
28209--28247
17
2.3
17
86
0
60
79
10
5
5
1.04
29832--29894
3
21.0
3
100
0
126
33
0
0
66
0.92
32714--32785
29
2.4
29
81
2
81
40
26
11
22
1.87
37757--37790
2
17.0
2
100
0
68
50
0
0
50
1.00
41269--41302
17
2.0
17
100
0
68
17
23
23
35
1.95
42311--42340
15
2.0
15
100
0
60
20
20
46
13
1.83
53120--53155
17
2.1
17
100
0
72
25
16
8
50
1.73
54859--54900
18
2.3
18
88
8
59
19
19
2
59
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58884--59000
57
2.1
57
100
0
234
26
22
17
34
1.95
67872--67908
14
2.5
15
95
4
67
18
2
29
48
1.62

Tables:   1

The End!