Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012152.1 Corchorus capsularis cultivar CVL-1 contig12173, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55620

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
151--175
2
12.5
2
100
0
50
52
0
0
48
1.00
5483--5513
3
10.0
3
93
6
53
0
32
0
67
0.91
8653--8684
2
16.0
2
100
0
64
50
0
0
50
1.00
10188--10254
35
1.9
35
93
0
116
22
17
13
46
1.83
17391--17467
37
2.1
37
95
0
136
33
16
15
33
1.91
27486--27541
28
2.0
28
100
0
112
32
10
14
42
1.80
31112--31631
22
23.8
21
72
12
281
36
14
16
32
1.89
31112--31652
44
12.4
44
74
10
339
37
14
16
32
1.88
37238--37308
35
2.0
35
91
0
115
35
16
12
35
1.87
40945--40976
16
2.0
16
100
0
64
50
6
12
31
1.65
42447--42484
12
3.2
12
85
11
51
0
47
7
44
1.32
43524--43565
21
2.0
21
90
0
66
9
14
21
54
1.68
48237--48314
33
2.4
33
84
4
95
29
30
28
11
1.92
48352--48429
33
2.4
33
88
0
111
26
35
17
19
1.94
48157--48529
108
3.4
107
79
6
394
26
33
23
16
1.95
48453--48529
33
2.3
33
88
4
111
27
36
25
10
1.89
48705--48767
30
2.1
30
88
5
92
9
9
53
26
1.64
48794--48859
12
5.8
12
84
10
93
25
4
33
36
1.77
48794--48859
21
3.0
22
87
10
98
25
4
33
36
1.77
48788--48867
24
3.5
23
81
8
101
26
3
33
36
1.74
50092--50119
1
28.0
1
100
0
56
100
0
0
0
0.00

Tables:   1

The End!