Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012157.1 Corchorus capsularis cultivar CVL-1 contig12178, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10874

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
427--496
27
2.5
28
80
19
85
2
14
7
75
1.12
954--994
12
3.5
11
86
6
55
36
0
2
60
1.10
946--994
23
2.1
23
81
7
55
42
2
2
53
1.24
3463--3555
16
5.9
15
75
17
82
11
19
34
34
1.88
3460--3554
31
3.0
33
83
10
94
11
18
34
34
1.87
3460--3554
32
3.0
30
79
15
95
11
18
34
34
1.87
3490--3553
9
7.8
9
70
19
50
10
18
34
35
1.86
4478--4510
16
2.1
16
88
5
50
3
15
51
30
1.58
5008--5095
32
2.8
32
89
0
131
19
7
34
38
1.81
5017--5095
16
4.9
17
74
10
76
18
7
32
40
1.79
9736--9770
12
3.0
12
95
4
63
31
34
17
17
1.93

Tables:   1

The End!