Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012158.1 Corchorus capsularis cultivar CVL-1 contig12179, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57315

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2280--2961
336
2.0
340
95
2
1228
35
20
17
26
1.94
3325--3353
10
3.0
10
95
5
51
20
37
10
31
1.86
15110--15159
15
3.4
15
73
13
50
12
8
2
78
1.05
19145--19765
49
12.6
49
83
4
617
22
30
14
32
1.94
22190--22219
15
2.0
15
93
0
51
16
20
6
56
1.62
29221--29262
11
3.9
11
81
3
50
21
28
35
14
1.92
29964--29990
12
2.2
12
100
0
54
44
7
40
7
1.60
41645--41701
25
2.4
25
88
5
82
26
12
7
54
1.63
46461--46517
22
2.6
23
73
15
57
52
12
26
8
1.67
46506--46565
21
2.9
21
82
0
75
58
15
25
1
1.46
46552--46608
24
2.4
25
88
8
91
57
12
26
3
1.50
46562--46615
24
2.5
22
82
14
60
61
9
25
3
1.43
50112--50138
6
4.5
6
100
0
54
55
14
0
29
1.40
52572--52678
33
3.2
32
84
5
117
8
28
40
23
1.83

Tables:   1

The End!