Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012161.1 Corchorus capsularis cultivar CVL-1 contig12182, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27513

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4267--4353
42
2.1
41
93
2
147
62
11
19
6
1.51
5527--5632
27
3.9
27
88
1
140
15
19
25
39
1.91
9402--9586
38
4.8
38
78
8
169
52
8
14
24
1.69
9402--9544
76
1.9
76
89
0
223
53
7
13
25
1.66
9499--9607
40
2.8
40
82
10
120
48
9
17
24
1.76
9700--9739
21
1.9
21
84
0
53
60
2
17
20
1.48
9705--9801
50
2.0
49
87
6
142
55
3
18
22
1.56
9705--9824
50
2.4
50
82
12
133
55
2
20
21
1.54
9773--9864
35
2.6
35
81
10
100
56
3
19
20
1.56
9848--9994
22
6.8
22
75
10
106
51
6
20
21
1.69
9821--9961
64
2.2
63
81
12
162
53
4
19
21
1.63
9946--10135
35
5.1
35
81
9
218
50
6
21
22
1.72
9932--10079
71
2.1
70
86
3
206
52
6
19
21
1.67
9952--10093
71
2.0
71
92
0
239
51
7
19
21
1.71
10062--10144
21
3.9
21
77
1
94
46
7
22
22
1.76
9869--10156
42
7.3
41
75
15
166
49
6
21
22
1.72
10219--10265
13
3.5
13
72
16
51
61
0
29
8
1.25
10737--10789
21
2.5
20
85
8
70
7
30
32
30
1.85
16337--16385
23
2.1
24
84
3
64
55
16
4
24
1.59
19754--19803
26
2.0
25
88
11
75
68
10
4
18
1.34
26358--26405
2
25.5
2
83
12
66
47
0
0
52
1.00
26896--26951
25
2.2
25
96
3
103
42
17
7
32
1.77

Tables:   1

The End!