Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012163.1 Corchorus capsularis cultivar CVL-1 contig12184, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34153

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
565--689
33
3.8
32
84
8
126
9
25
42
22
1.84
602--708
33
3.2
33
80
7
119
8
28
42
20
1.81
688--729
21
2.0
21
95
0
75
16
33
30
19
1.94
6163--7085
323
2.9
311
87
4
1334
22
21
31
24
1.98
9980--10046
22
3.0
23
66
24
61
13
10
16
59
1.60
16116--16182
33
2.0
33
88
5
100
8
23
40
26
1.84
17850--17955
33
3.3
33
90
3
164
43
20
11
24
1.85
17963--18049
33
2.6
32
87
7
120
43
22
8
25
1.80
20517--20583
33
2.0
33
88
5
100
10
22
40
26
1.86
20908--20937
16
1.9
16
93
6
53
46
13
3
36
1.60
22888--23242
176
2.0
176
100
0
710
25
25
12
35
1.92

Tables:   1

The End!