Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012172.1 Corchorus capsularis cultivar CVL-1 contig12193, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35491

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3384--3533
58
2.6
58
78
3
169
43
6
22
28
1.77
3525--3572
22
2.2
22
88
0
69
39
10
25
25
1.87
3533--3608
22
3.5
22
81
3
82
40
6
23
28
1.80
3613--3666
21
2.5
21
87
6
72
46
5
18
29
1.72
3645--3776
58
2.3
59
82
6
153
43
12
22
21
1.86
3761--3965
8
25.1
8
65
15
82
48
3
22
25
1.66
3762--3966
24
8.7
24
70
15
115
48
3
22
25
1.68
3809--3902
45
2.1
45
87
0
134
48
2
21
27
1.61
4913--4965
27
2.0
26
89
7
81
13
13
0
73
1.10
5757--5793
13
2.7
14
87
8
58
51
8
8
32
1.61
5775--5810
19
1.9
18
94
5
63
58
5
8
27
1.50
5861--5905
22
2.1
21
83
4
54
28
0
20
51
1.48
6867--6946
41
2.0
41
87
5
117
32
17
16
33
1.92
20169--20226
19
2.9
19
79
5
62
37
6
18
36
1.78
21499--21528
16
1.9
15
93
6
51
53
0
6
40
1.27
27536--27588
21
2.5
20
85
8
70
7
30
32
30
1.85
31190--31245
21
2.7
21
78
8
53
23
32
33
10
1.89

Tables:   1

The End!