Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012174.1 Corchorus capsularis cultivar CVL-1 contig12195, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20937

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2329--2358
2
15.5
2
93
6
53
50
0
0
50
1.00
5529--5695
31
5.6
30
67
17
105
34
20
19
26
1.96
5533--5694
60
2.7
60
93
2
265
35
20
19
25
1.96
5723--5890
31
5.5
31
69
16
145
25
20
21
32
1.97
5725--5886
60
2.7
60
95
0
279
24
20
20
33
1.97
8964--8990
4
6.8
4
100
0
54
25
0
22
51
1.48
9924--9971
20
2.3
22
85
7
64
0
39
0
60
0.97
13706--13753
22
2.3
20
86
10
62
39
25
16
18
1.91
13672--13775
53
2.0
53
84
0
136
37
25
19
18
1.94
14655--14720
25
2.7
25
80
15
68
63
6
6
24
1.40
15075--15133
30
2.0
30
100
0
118
47
15
3
33
1.62
15222--15263
8
5.0
8
88
5
57
40
2
0
57
1.12
15247--15283
16
2.4
16
86
8
51
56
0
0
43
0.99
17206--17280
36
2.1
36
87
0
105
25
9
17
48
1.77
18055--18098
20
2.2
20
91
0
70
29
4
34
31
1.78
20104--20181
29
2.7
29
97
0
147
19
23
30
26
1.98

Tables:   1

The End!