Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012175.1 Corchorus capsularis cultivar CVL-1 contig12196, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69002

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
179--260
31
2.7
31
77
5
78
24
23
15
36
1.94
2355--2402
20
2.5
20
87
9
66
31
14
4
50
1.62
26564--26671
33
3.3
33
84
7
130
21
43
25
9
1.82
26621--26672
10
4.9
10
73
13
50
23
48
23
5
1.72
29704--29901
100
2.0
100
95
0
360
51
11
13
24
1.74
30088--30120
15
2.1
16
88
5
50
15
18
6
60
1.54
30247--30311
31
2.1
32
94
2
114
44
6
4
44
1.49
30646--30893
128
1.9
128
92
1
417
35
12
13
38
1.82
33982--34047
32
2.1
32
88
5
98
42
9
7
40
1.65
36845--36910
32
2.1
32
91
0
105
40
9
4
45
1.56
38068--38100
15
2.1
16
88
5
50
15
18
6
60
1.54
38227--38289
32
2.0
32
87
0
90
44
7
6
41
1.59
40073--40125
18
3.3
18
65
29
55
22
45
22
9
1.81
50938--50997
27
2.2
27
84
0
75
50
1
18
30
1.57
57347--57401
25
2.2
25
93
0
92
21
29
10
38
1.88
60696--61208
264
1.9
264
93
3
884
40
11
16
32
1.84
66861--66940
23
3.5
23
84
1
99
38
13
6
41
1.70
66834--66940
45
2.4
45
80
9
119
36
15
9
38
1.80
66569--67568
22
44.9
22
66
18
165
35
16
9
39
1.80
68454--68515
31
2.0
32
90
6
101
48
4
14
32
1.65

Tables:   1

The End!