Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012179.1 Corchorus capsularis cultivar CVL-1 contig12200, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8377
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34


Found at i:6638 original size:19 final size:19

Alignment explanation


    Indices: 6627--6663  Score: 58
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       6617 AATTTTTAAG

                               
       6627 TAAAAATATAATATATAAA
          1 TAAAAATATAATATATAAA

                   *           
       6646 TAAAAATTTAATAT-TAAA
          1 TAAAAATATAATATATAAA

       6664 ACAATTAATT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18    4  0.24
  19   13  0.76

ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35


Consensus pattern (19 bp):   
TAAAAATATAATATATAAA

Found at i:6794 original size:21 final size:21

Alignment explanation


    Indices: 6740--6785  Score: 92
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       6730 TACTAAAACT

                                 
       6740 AATACTCGTACCCGATTATAC
          1 AATACTCGTACCCGATTATAC

                                 
       6761 AATACTCGTACCCGATTATAC
          1 AATACTCGTACCCGATTATAC

                
       6782 AATA
          1 AATA

       6786 TTCTAACCCT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   25  1.00

ACGTcount: A:0.37, C:0.26, G:0.09, T:0.28


Consensus pattern (21 bp):   
AATACTCGTACCCGATTATAC
Done.