Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012188.1 Corchorus capsularis cultivar CVL-1 contig12209, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4028

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25--190
2
85.5
2
69
8
74
41
1
9
47
1.45
432--682
21
12.1
21
80
7
271
27
8
22
40
1.84
432--682
63
4.0
62
81
6
303
27
8
22
40
1.84
458--678
83
2.7
84
86
4
297
28
9
23
39
1.85
1041--1174
16
8.4
16
74
11
123
32
38
19
9
1.84
1041--1156
32
3.7
31
83
5
144
30
39
19
10
1.85
1041--1176
32
4.3
31
82
7
141
32
38
19
9
1.84
1998--2101
32
3.3
32
85
4
131
33
38
20
7
1.81
2020--2084
9
7.9
9
74
19
52
33
35
21
9
1.85
2013--2116
47
2.2
48
84
1
129
35
34
20
9
1.85
2013--2116
16
6.6
16
80
2
120
35
34
20
9
1.85
3228--3267
21
1.9
21
94
0
71
20
37
2
40
1.66

Tables:   1

The End!