genome.fa.s12189.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012189.1 Corchorus capsularis cultivar CVL-1 contig12210, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57444

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
995--1096	22	4.7	22	80	8	93	33	15	12	38	1.86
1011--1109	43	2.3	44	84	10	132	34	19	11	35	1.87
1014--1097	22	3.9	22	79	6	100	35	16	10	36	1.84
1016--1109	22	4.3	22	77	8	93	36	17	11	35	1.86
2986--3074	22	4.0	22	77	8	90	35	17	10	35	1.84
2986--3046	23	2.7	23	85	7	81	37	14	9	37	1.80
2988--3073	45	1.9	44	83	2	109	37	17	9	36	1.82
2990--3094	45	2.4	45	79	4	106	36	16	11	36	1.84
3599--3702	44	2.4	44	81	1	120	39	11	13	35	1.81
3533--3748	22	9.8	22	71	5	78	39	13	9	36	1.78
3638--3792	44	3.5	43	80	9	123	38	14	12	34	1.84
3683--3797	22	5.2	21	73	12	79	39	15	10	34	1.82
8093--8129	17	2.2	16	90	4	56	54	5	2	37	1.38
8959--8991	2	16.5	2	100	0	66	51	0	0	48	1.00
13072--13275	106	1.9	104	80	10	236	38	12	10	38	1.78
18002--18034	2	16.5	2	100	0	66	48	0	0	51	1.00
18708--19075	133	2.6	134	80	11	361	26	16	15	41	1.88
18708--19075	140	2.6	134	81	10	384	26	16	15	41	1.88
23845--23883	2	19.0	2	94	5	69	48	0	2	48	1.15
24025--24086	31	2.0	32	93	3	108	37	9	3	50	1.52
27878--28048	94	1.8	93	93	1	297	51	0	14	33	1.47
28223--29975	894	1.9	895	93	2	2996	38	13	14	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30785--30884	22	4.6	22	78	2	94	40	13	12	35	1.81
30778--30884	43	2.4	44	78	4	126	40	13	12	34	1.81
31054--31138	22	3.9	21	80	11	91	31	10	11	45	1.75
31103--31155	22	2.4	22	84	6	63	32	11	16	39	1.85
31773--32068	109	2.7	109	90	4	432	37	11	1	49	1.50
32118--32167	26	1.9	26	100	0	100	36	0	16	48	1.46
40207--40233	13	2.1	13	100	0	54	33	0	22	44	1.53

Tables:   1

The End!