genome.fa.s12192.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012192.1 Corchorus capsularis cultivar CVL-1 contig12213, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98362

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259--343	23	3.7	23	84	1	100	37	14	7	41	1.73
31--481	22	20.5	22	71	8	236	35	17	9	37	1.82
461--511	19	2.6	20	81	6	68	25	17	11	45	1.83
620--784	22	7.6	22	72	5	86	34	13	9	42	1.77
593--759	88	1.9	88	80	4	194	32	13	10	42	1.79
728--921	22	8.6	22	67	19	73	36	12	9	42	1.75
885--935	22	2.3	22	82	0	66	41	19	7	31	1.80
1035--1235	22	9.3	22	78	11	139	37	17	11	32	1.86
1113--1190	39	2.0	39	94	0	138	35	15	15	33	1.89
1091--1214	61	2.0	61	85	3	169	37	16	12	33	1.87
1401--1438	19	2.0	20	85	15	53	63	2	5	28	1.30
1735--1800	31	2.1	31	86	5	89	46	3	19	30	1.65
1868--1923	22	2.5	22	77	11	60	35	17	8	37	1.82
1959--2074	22	5.2	22	75	8	83	38	20	10	30	1.86
3143--3220	38	2.1	35	90	6	120	60	10	14	15	1.59
3332--3396	31	2.1	31	83	8	80	49	4	13	32	1.63
7251--7292	21	2.0	21	100	0	84	19	9	28	42	1.82
7250--7301	21	2.7	20	88	11	81	21	9	26	42	1.83
9965--10013	21	2.4	21	89	3	73	24	38	16	20	1.92
28501--28596	43	2.2	42	80	8	104	34	10	12	42	1.77
32877--32904	1	28.0	1	100	0	56	0	0	0	100	0.00
33965--33997	14	2.4	14	100	0	66	36	0	63	0	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34403--34517	38	3.0	39	64	13	94	49	5	7	37	1.54
35543--35596	21	2.6	20	85	8	72	40	22	18	18	1.91
36623--36803	99	1.9	95	85	6	247	25	11	23	39	1.88
37013--37046	16	2.1	16	94	0	59	14	23	14	47	1.82
37829--37876	24	1.9	25	84	16	64	54	0	2	43	1.12
39356--39410	21	2.6	21	100	0	110	30	0	36	32	1.58
39691--39726	19	1.9	20	88	11	58	30	0	0	69	0.89
40113--40276	82	2.0	84	89	4	253	20	27	9	42	1.83
45380--45488	45	2.4	45	79	0	110	33	13	20	32	1.92
54268--54296	13	2.1	14	93	6	51	34	6	17	41	1.76
54505--54570	31	2.1	33	91	5	109	10	40	34	13	1.79
55185--55222	20	1.9	20	84	10	51	44	13	18	23	1.85
57146--57313	77	2.2	77	85	5	220	33	16	9	41	1.80
63772--63839	30	2.3	29	76	2	73	30	10	17	41	1.83
65307--65366	29	2.1	29	90	0	93	26	25	21	26	2.00
76282--76326	22	2.0	22	100	0	90	17	17	8	55	1.67
78001--78025	12	2.1	12	100	0	50	44	8	8	40	1.63
78414--78449	2	18.5	2	88	5	56	47	0	0	52	1.00
82048--82087	2	20.0	2	100	0	80	0	50	0	50	1.00
91168--91194	7	3.9	7	100	0	54	85	0	14	0	0.61

Tables:   1

The End!