Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012193.1 Corchorus capsularis cultivar CVL-1 contig12214, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47973

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1855--1880
2
13.0
2
100
0
52
50
0
0
50
1.00
2695--2860
34
4.6
34
71
20
124
48
6
16
28
1.70
2688--2860
71
2.4
71
92
2
283
47
5
17
28
1.70
2940--3049
40
2.8
40
88
0
157
52
4
20
21
1.64
3021--3050
16
1.9
15
93
6
51
56
6
20
16
1.62
3056--3140
35
2.4
36
82
3
86
62
3
22
11
1.44
3094--3237
14
10.9
13
68
16
75
54
2
22
20
1.54
3088--3148
21
2.9
21
68
18
54
57
1
22
18
1.49
3076--3238
35
4.7
35
75
11
156
56
1
22
19
1.51
3137--3202
28
2.4
27
92
2
105
54
1
22
21
1.53
3088--3198
41
2.7
42
80
9
104
56
1
22
18
1.51
3215--3301
34
2.4
36
83
9
108
54
2
24
19
1.56
3282--3514
22
11.0
21
67
14
81
52
5
21
21
1.67
3164--3325
85
1.9
85
87
2
236
53
3
23
19
1.59
3164--3344
85
2.1
85
84
4
222
53
3
23
19
1.60
3289--3347
15
4.0
15
67
20
52
54
5
20
20
1.63
3282--3369
45
2.0
45
84
6
117
53
3
22
20
1.60
3384--3460
35
2.2
35
85
2
100
53
6
20
19
1.67
3496--3582
17
5.4
16
73
14
72
56
4
22
16
1.58
6229--6289
14
4.3
14
77
10
61
44
6
11
37
1.67
6926--6960
17
2.2
17
90
10
56
80
0
20
0
0.72
7533--7586
19
2.9
18
84
12
74
79
0
20
0
0.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7534--7589
20
2.8
19
89
7
85
80
0
19
0
0.71
18651--18682
16
2.0
16
100
0
64
37
18
12
31
1.88
23671--23881
110
1.9
110
93
0
359
48
14
7
29
1.71
25920--25983
33
1.9
33
100
0
128
54
6
17
21
1.64
25922--25976
17
3.3
17
74
5
67
54
5
18
21
1.63
26656--26691
2
18.5
2
91
5
56
44
0
2
52
1.15
27118--27179
18
3.2
18
78
17
70
58
0
3
38
1.15
27100--27150
22
2.2
24
80
16
63
58
1
0
39
1.09
27102--27179
21
3.6
21
73
20
72
57
1
2
38
1.20
38192--38247
13
4.5
13
91
6
89
35
14
23
26
1.93
38192--38247
25
2.2
26
90
6
89
35
14
23
26
1.93
42511--42549
20
1.9
21
89
5
62
23
20
0
56
1.42

Tables:   1

The End!