Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001220.1 Corchorus capsularis cultivar CVL-1 contig01220, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 871

Length: 1453
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.40


Found at i:941 original size:2 final size:2

Alignment explanation


    Indices: 934--977  Score: 63
    Period size: 2  Copynumber: 22.0  Consensus size: 2

        924 ATTTCTAAGC

                                          *                                
        934 AT AT AT AT AT AT AT AT AT AT GT -T AT AT CAT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT

              
        976 AT
          1 AT

        978 TAAAACTGTA


Statistics
Matches: 39,  Mismatches: 1, Indels: 4
        0.89            0.02        0.09

Matches are distributed among these distances:
   1    1  0.03
   2   36  0.92
   3    2  0.05

ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50


Consensus pattern (2 bp):   
AT

Done.