Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012204.1 Corchorus capsularis cultivar CVL-1 contig12225, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68851

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6932--6959
1
28.0
1
100
0
56
100
0
0
0
0.00
8454--8524
12
5.9
12
84
0
88
1
53
2
42
1.24
8466--8521
3
18.7
3
74
7
51
0
57
1
41
1.09
10449--10479
2
15.5
2
100
0
62
48
0
0
51
1.00
11095--11126
14
2.4
14
94
5
57
31
0
0
68
0.90
15882--15933
7
7.0
7
77
18
52
3
15
0
80
0.85
15894--15939
22
2.1
22
92
8
76
8
8
0
82
0.84
15882--15946
29
2.3
28
80
12
78
6
13
0
80
0.90
24360--24427
31
2.2
31
86
5
93
35
16
14
33
1.89
27786--27810
1
25.0
1
100
0
50
0
0
0
100
0.00
41214--41267
10
5.3
11
73
13
53
55
16
1
25
1.51
41938--42038
51
2.0
50
86
1
139
45
15
8
29
1.77
42007--42041
16
2.1
17
89
5
54
31
14
11
42
1.81
42840--43008
86
2.0
85
84
1
221
49
15
14
20
1.79
43120--43162
22
2.0
22
95
0
77
39
39
16
4
1.69
43265--43296
16
2.0
16
100
0
64
25
12
0
62
1.30
47005--47078
32
2.3
33
88
2
105
9
43
33
13
1.76
47235--47260
13
2.0
13
100
0
52
30
30
7
30
1.85
54057--54095
14
2.8
14
100
0
78
66
20
5
7
1.36
63948--64020
38
1.9
38
94
0
128
21
20
35
21
1.96
67105--67143
19
2.1
19
100
0
78
10
10
5
74
1.21
67109--67150
19
2.3
18
88
8
59
14
9
4
71
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68253--68390
34
4.2
33
88
7
201
23
27
20
28
1.99
68730--68767
20
1.9
20
88
0
58
28
39
10
21
1.86

Tables:   1

The End!