Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012206.1 Corchorus capsularis cultivar CVL-1 contig12227, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68926

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
480--548
31
2.3
31
87
2
95
31
23
17
27
1.97
820--871
25
2.1
25
100
0
104
34
11
17
36
1.86
1145--1232
46
1.9
46
90
0
140
26
29
15
28
1.96
5697--5721
12
2.1
12
100
0
50
92
0
8
0
0.40
12682--12719
13
2.9
13
92
0
67
42
10
7
39
1.69
13675--13710
18
2.0
18
94
0
63
36
16
22
25
1.94
18090--18114
13
1.9
13
100
0
50
44
8
8
40
1.63
18720--18803
26
3.2
26
64
12
73
42
17
7
32
1.77
18721--18824
52
2.0
52
100
0
208
46
15
7
30
1.74
24507--24747
32
7.4
32
94
0
356
15
41
29
13
1.85
24938--25074
32
4.2
32
90
0
193
11
43
36
8
1.71
30132--30172
2
20.5
2
100
0
82
48
0
0
51
1.00
31175--31235
24
2.6
24
89
7
90
8
22
1
67
1.27
33001--33043
21
2.0
21
86
0
59
27
23
25
23
2.00
42862--42900
20
1.9
20
89
5
60
58
7
2
30
1.39
44813--44862
5
10.0
5
82
8
66
2
20
0
78
0.86
44816--44869
25
2.2
25
90
6
83
1
22
0
75
0.89
44810--44877
35
1.9
35
82
5
84
1
26
0
72
0.94
46897--46965
31
2.2
31
86
0
93
27
17
15
39
1.90
46897--46974
31
2.5
31
83
2
77
29
15
16
38
1.90
46990--47034
18
2.4
19
92
7
74
71
2
0
26
0.98
61421--61453
11
2.8
12
90
9
59
9
24
9
57
1.58

Tables:   1

The End!