Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012209.1 Corchorus capsularis cultivar CVL-1 contig12230, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7080

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
351--443
22
4.2
23
80
4
104
33
9
19
37
1.84
352--492
22
6.3
21
75
8
102
31
9
20
38
1.84
528--586
22
2.7
22
82
10
75
37
8
16
37
1.80
605--975
22
16.7
22
67
17
96
40
9
14
35
1.79
741--841
44
2.3
45
83
6
127
42
7
11
37
1.71
764--862
44
2.2
44
83
3
119
38
9
12
40
1.74
879--1000
44
2.8
44
75
6
113
44
8
13
34
1.73
762--912
66
2.3
66
100
0
302
39
9
13
37
1.76
762--958
66
3.0
66
91
3
263
40
9
14
36
1.77
1081--1128
19
2.5
19
90
10
71
45
10
16
27
1.80
1081--1679
22
27.6
22
72
13
273
39
10
15
35
1.81
1081--1679
66
9.2
64
70
15
306
39
10
15
35
1.81
1005--1679
44
15.7
44
69
13
278
38
9
15
35
1.81
2743--2781
17
2.4
17
83
8
55
58
0
0
41
0.98
3570--3980
154
2.7
153
81
8
464
31
14
21
32
1.93
4542--4576
18
1.9
18
88
0
52
8
11
37
42
1.72
4765--4814
20
2.4
21
83
12
68
52
0
6
42
1.26
4774--4873
20
5.1
20
72
12
82
50
0
6
44
1.26
4832--4875
7
6.3
7
84
7
54
50
0
2
47
1.13
4756--4874
58
2.1
57
83
10
145
48
0
5
45
1.26
4835--4876
13
3.0
14
75
10
50
47
0
2
50
1.14

Tables:   1

The End!