Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012216.1 Corchorus capsularis cultivar CVL-1 contig12237, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28547

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
827--897
29
2.4
29
79
9
81
36
25
14
23
1.92
1793--1826
9
3.8
9
92
0
59
82
0
17
0
0.67
3123--3147
13
1.9
13
100
0
50
48
0
0
52
1.00
3759--3784
2
13.0
2
100
0
52
50
0
0
50
1.00
6558--6842
22
13.1
22
71
11
124
35
15
9
39
1.80
6415--6970
44
12.9
44
70
12
268
35
17
9
37
1.82
6853--6901
19
2.5
20
90
6
82
26
18
10
44
1.81
6983--7125
44
3.3
43
71
13
121
32
13
8
46
1.73
7007--7131
22
5.7
22
76
7
103
32
14
8
44
1.76
7098--7209
22
5.0
23
78
14
92
34
16
9
39
1.81
7098--7200
46
2.3
45
80
9
113
34
15
9
39
1.80
7259--7313
22
2.5
23
82
11
71
38
16
5
40
1.72
7274--7324
22
2.3
22
82
0
66
41
19
7
31
1.80
7330--7384
22
2.5
22
77
16
60
36
14
10
38
1.81
7274--7380
56
1.9
56
86
3
153
40
16
8
34
1.79
7424--7488
22
2.9
22
79
6
69
36
20
9
33
1.84
7475--7561
22
4.0
21
74
5
66
35
16
10
37
1.82
7728--7766
19
2.0
20
85
14
55
66
2
2
28
1.18
8079--8137
31
1.9
31
93
6
102
47
5
20
27
1.71
8173--8230
13
4.2
13
73
16
53
41
3
13
41
1.62
8172--8222
15
3.4
15
70
20
52
41
1
11
45
1.52
8164--8223
30
2.0
30
100
0
120
36
3
13
46
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8170--8234
30
2.2
30
88
0
94
38
3
12
46
1.57
12327--12374
25
1.9
25
100
0
96
35
14
8
41
1.76
13059--13104
8
5.2
9
89
10
69
45
0
21
32
1.52
13059--13104
4
10.5
4
90
9
56
45
0
21
32
1.52
18467--18869
35
11.7
35
86
2
465
34
17
9
38
1.83
18467--18869
70
5.8
70
87
3
521
34
17
9
38
1.83
18744--18800
19
3.2
19
75
14
75
38
14
7
40
1.73
19497--19524
10
2.8
10
100
0
56
0
10
0
89
0.49
19487--19541
16
3.4
16
80
7
58
0
23
0
76
0.79
23216--23325
35
3.1
35
77
5
130
47
20
10
21
1.79
26015--26042
12
2.3
12
100
0
56
25
7
10
57
1.58
27091--27129
2
19.5
2
89
0
60
46
2
0
51
1.14

Tables:   1

The End!