Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012222.1 Corchorus capsularis cultivar CVL-1 contig12243, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115156

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1544--1582
19
2.1
19
100
0
78
23
25
20
30
1.98
2734--2788
26
2.1
26
82
0
65
30
23
9
36
1.86
5309--5374
32
2.1
32
85
5
89
71
0
27
1
0.95
8420--9026
303
2.0
303
91
0
980
27
21
17
33
1.96
12362--12446
30
2.8
30
83
3
98
34
18
5
41
1.75
26660--26684
2
12.5
2
100
0
50
52
0
0
48
1.00
36208--36244
19
1.9
19
94
0
65
18
35
10
35
1.86
36725--36780
2
30.0
2
75
13
57
57
0
0
42
0.99
40623--40664
3
14.0
3
100
0
84
33
0
0
66
0.92
41027--41109
42
2.0
41
93
4
141
42
8
21
27
1.82
56717--56767
25
2.0
25
96
0
93
31
15
21
31
1.95
57329--57359
13
2.4
13
94
0
53
58
3
0
38
1.15
57402--57435
2
18.0
2
88
11
54
50
0
0
50
1.00
57928--58097
84
2.0
84
98
0
331
50
24
2
23
1.61
58813--58856
12
3.4
12
81
12
52
65
0
0
34
0.93
58813--58856
8
5.7
7
82
17
52
65
0
0
34
0.93
58811--58866
20
2.8
20
84
10
62
62
0
3
33
1.12
61032--61061
11
2.6
11
94
5
51
86
0
13
0
0.57
61680--61745
24
2.6
25
80
9
62
68
6
12
13
1.38
62685--62739
25
2.3
25
79
20
64
43
7
3
45
1.49
65965--65994
14
2.1
14
100
0
60
43
0
23
33
1.54
72524--72592
29
2.3
29
80
9
77
30
11
20
37
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75613--75656
22
2.0
22
90
0
70
31
31
18
18
1.95
83533--83574
17
2.4
18
84
4
50
85
2
9
2
0.77
83533--83575
10
4.7
9
80
13
52
83
2
11
2
0.83
84788--84979
94
2.0
94
98
0
375
42
21
13
22
1.87
85766--85832
33
2.0
33
100
0
134
40
14
17
26
1.89
94547--94789
109
2.3
105
89
5
364
41
8
8
41
1.65
99019--99123
27
3.9
27
87
0
120
40
29
13
16
1.86
99075--99145
27
2.6
27
86
4
90
46
29
11
12
1.77
103685--103753
33
2.0
34
91
5
113
34
8
23
33
1.85
109850--109885
18
2.0
18
100
0
72
61
27
5
5
1.41
114941--114968
14
2.0
14
100
0
56
42
0
0
57
0.99
114899--114968
10
6.6
10
72
27
56
42
4
0
52
1.20

Tables:   1

The End!