genome.fa.s12223.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012223.1 Corchorus capsularis cultivar CVL-1 contig12244, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  227682

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3254--3289	18	2.0	18	89	10	56	47	5	0	47	1.25
18391--18420	10	3.0	10	95	0	51	86	3	10	0	0.67
18393--18437	11	3.6	13	80	17	51	80	6	11	2	0.99
19462--19512	27	1.9	26	88	4	75	15	17	21	45	1.86
23331--23444	40	2.8	40	85	1	147	52	11	12	23	1.71
23337--23463	40	3.2	39	79	10	132	48	13	12	25	1.77
23314--23463	80	1.9	80	82	8	189	50	12	14	23	1.76
23548--23971	22	19.3	22	78	3	289	47	9	18	24	1.79
23541--23971	33	13.0	33	77	4	305	47	9	18	24	1.79
23550--23971	55	7.5	55	82	7	350	47	9	18	24	1.79
23964--24214	36	7.0	35	81	8	270	43	9	21	25	1.83
23949--24234	36	7.9	34	79	12	209	43	10	21	25	1.84
25240--25268	2	14.5	2	100	0	58	48	0	0	51	1.00
27942--27970	14	2.1	14	100	0	58	20	20	37	20	1.94
30755--30790	19	1.9	18	88	5	54	19	27	8	44	1.79
30796--30875	27	3.0	27	94	0	142	20	23	2	53	1.57
31013--31076	29	2.2	29	86	2	85	18	9	3	68	1.30
31043--31473	20	20.1	21	67	17	96	23	18	4	53	1.63
31102--31405	128	2.4	125	87	6	436	22	19	4	53	1.63
31102--31478	22	17.9	22	71	14	208	23	19	4	53	1.63
31144--31473	103	3.1	106	81	8	363	23	19	4	52	1.64
31525--31638	34	3.3	33	85	4	129	20	16	7	56	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34975--35021	21	2.3	21	96	3	87	23	8	21	46	1.78
37710--37748	4	9.8	4	94	0	69	25	0	25	48	1.51
44216--44280	31	2.1	31	83	13	80	38	21	6	33	1.78
45453--45545	46	2.0	46	100	0	186	49	10	13	25	1.75
54006--54034	6	4.8	6	100	0	58	0	68	13	17	1.20
54381--54446	8	7.9	8	76	20	64	25	3	25	45	1.68
55447--55505	2	29.5	2	77	13	50	44	3	1	50	1.28
60795--60830	14	2.4	16	90	9	58	2	11	0	86	0.68
63066--63291	106	2.2	104	90	1	344	29	18	17	34	1.94
71336--71428	34	2.8	31	80	8	96	31	17	34	17	1.93
71336--71428	32	2.8	33	82	8	109	31	17	34	17	1.93
76079--76305	107	2.2	106	86	2	314	30	18	16	34	1.93
77647--77984	48	7.2	47	76	13	245	22	29	14	33	1.94
77737--77816	38	2.1	38	90	4	126	22	32	15	30	1.94
77688--77862	86	2.0	84	85	9	230	21	30	15	32	1.94
77774--77977	95	2.1	96	82	3	241	20	30	13	35	1.92
77973--78262	63	4.5	64	81	7	238	27	23	14	33	1.94
78038--78262	63	3.6	63	87	2	265	27	24	14	33	1.94
85180--85232	21	2.5	21	85	8	65	9	30	32	28	1.88
87163--87207	21	2.0	22	91	8	74	35	13	0	51	1.41
89858--89909	16	3.4	14	79	10	50	55	5	5	32	1.47
98176--98474	26	11.2	26	70	17	161	20	21	3	54	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98323--98362	20	2.0	20	85	0	53	17	25	0	57	1.40
98421--98511	37	2.4	37	81	15	98	15	23	2	59	1.47
98459--98517	27	2.1	28	93	3	102	16	22	3	57	1.54
98398--98529	65	2.0	66	86	4	187	18	22	2	56	1.53
98459--98531	27	2.7	28	79	12	82	17	23	2	56	1.54
98486--98569	39	2.2	36	81	8	96	16	25	1	57	1.47
98590--98991	22	18.3	23	71	15	155	22	18	5	53	1.64
98571--98710	50	2.9	48	77	13	130	24	15	5	55	1.61
98644--98704	29	2.1	28	82	8	70	26	16	6	50	1.69
98782--98940	20	7.6	20	73	14	99	22	20	5	51	1.68
98750--98991	107	2.3	107	78	4	265	21	18	5	54	1.63
98933--99016	22	4.0	21	78	6	82	21	15	7	55	1.63
98955--99039	43	2.0	43	83	4	109	22	20	4	52	1.64
99068--99102	15	2.4	15	95	4	63	20	25	5	48	1.71
99076--99210	7	19.3	7	67	17	75	17	22	3	55	1.58
99095--99163	20	3.7	20	66	25	51	17	24	2	55	1.56
99080--99210	35	3.8	34	90	4	208	17	22	3	55	1.58
99271--99375	26	4.0	26	80	4	122	16	20	8	55	1.67
101324--101377	27	2.0	27	100	0	108	11	25	14	48	1.77
108277--108311	13	2.7	13	90	0	61	60	8	8	22	1.54
109221--109245	10	2.5	10	100	0	50	24	8	20	48	1.76
122704--122742	20	2.0	20	84	0	51	28	25	25	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123431--123499	20	3.5	20	97	0	129	21	34	33	10	1.87
123431--123502	11	7.1	11	74	16	75	20	36	33	9	1.86
129496--129569	36	2.1	36	100	0	148	40	25	14	18	1.89
131213--131269	30	1.9	30	100	0	114	47	21	3	28	1.67
147172--147213	20	2.2	20	87	12	61	64	19	4	11	1.44
151499--151553	16	3.5	15	82	9	65	7	12	32	47	1.69
159705--159778	30	2.5	31	80	6	89	13	29	29	27	1.94
166174--166269	30	3.2	30	77	5	122	13	32	29	25	1.94
168013--168048	2	18.0	2	100	0	72	50	0	0	50	1.00
170900--170930	14	2.2	14	94	0	53	67	0	0	32	0.91
176855--176991	72	1.9	72	92	0	229	35	16	18	29	1.92
177150--177200	18	2.7	20	79	11	63	21	9	29	39	1.85
177593--177623	2	15.5	2	100	0	62	51	0	0	48	1.00
178146--178202	17	3.4	17	80	4	53	26	21	17	35	1.95
181270--181330	16	3.8	16	85	8	88	40	37	14	6	1.72
186302--186351	23	2.2	23	82	7	57	38	4	4	54	1.38
186286--186360	24	3.0	25	71	16	66	41	2	5	50	1.39
189318--189727	156	2.6	156	89	0	597	31	16	19	32	1.94
190054--190115	28	2.2	28	91	5	99	30	22	24	22	1.99
190802--190855	28	2.0	28	85	7	76	66	14	3	14	1.38
193284--193354	21	3.2	23	68	11	76	49	0	12	38	1.41
193281--193367	43	2.0	43	95	4	158	47	0	12	40	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193294--193360	20	3.2	20	64	32	50	49	0	13	37	1.42
193298--193378	23	3.6	24	69	15	66	48	0	13	38	1.43
194183--194475	108	2.6	108	90	5	437	49	2	11	36	1.50
202119--202170	3	17.7	3	96	4	97	65	0	0	34	0.93
214169--214364	102	1.9	102	93	2	340	47	13	9	29	1.75
218052--218093	2	21.0	2	85	0	57	50	0	4	45	1.23

Tables:   1

The End!