Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001223.1 Corchorus capsularis cultivar CVL-1 contig01223, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10632
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34


Found at i:9086 original size:11 final size:11

Alignment explanation


    Indices: 9070--9099  Score: 51
    Period size: 11  Copynumber: 2.7  Consensus size: 11

       9060 ACAATTGGCT

                       
       9070 TATGTGGCGCC
          1 TATGTGGCGCC

                   *   
       9081 TATGTGGTGCC
          1 TATGTGGCGCC

                    
       9092 TATGTGGC
          1 TATGTGGC

       9100 CTATGCAACC


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  11   17  1.00

ACGTcount: A:0.10, C:0.20, G:0.37, T:0.33


Consensus pattern (11 bp):   
TATGTGGCGCC
Done.