Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012231.1 Corchorus capsularis cultivar CVL-1 contig12252, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6289
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.31


Found at i:344 original size:15 final size:16

Alignment explanation


    Indices: 317--358  Score: 50
    Period size: 15  Copynumber: 2.7  Consensus size: 16

        307 CTTGAAATCT

                  *         
        317 ATAAAAACAAACA-AA
          1 ATAAAATCAAACATAA

              *             
        332 ATTAAATCAAACATAA
          1 ATAAAATCAAACATAA

            *          
        348 GTAAAATCAAA
          1 ATAAAATCAAA

        359 ACTAAAACTA


Statistics
Matches: 22,  Mismatches: 4, Indels: 1
        0.81            0.15        0.04

Matches are distributed among these distances:
  15   11  0.50
  16   11  0.50

ACGTcount: A:0.69, C:0.12, G:0.02, T:0.17


Consensus pattern (16 bp):   
ATAAAATCAAACATAA
Done.