genome.fa.s12233.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012233.1 Corchorus capsularis cultivar CVL-1 contig12254, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79660

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6823--6938	56	2.0	57	93	3	198	20	16	11	51	1.74
7393--7428	18	2.0	18	94	0	63	25	16	19	38	1.92
7500--7529	11	2.7	11	94	0	51	0	13	0	86	0.57
11487--11646	55	2.8	56	79	7	162	32	22	15	30	1.94
11493--11796	59	5.0	60	75	11	253	30	23	16	30	1.96
11548--11792	67	3.9	65	81	5	263	30	22	16	30	1.96
12375--12517	75	1.9	74	91	1	232	47	18	18	14	1.82
16405--16440	18	2.1	17	89	5	54	50	11	2	36	1.53
17073--17215	61	2.3	61	84	9	182	33	20	16	29	1.94
17452--17487	18	2.1	18	89	5	56	47	8	2	41	1.48
17747--17801	25	2.2	25	100	0	110	38	27	5	29	1.79
32689--33019	168	2.0	168	93	0	572	30	25	21	22	1.99
33273--33321	25	2.0	25	84	8	64	59	0	0	40	0.98
33271--33351	22	3.5	23	76	19	80	56	1	1	40	1.15
41131--41194	30	2.1	30	100	0	128	17	15	51	15	1.77
46793--46823	1	31.0	1	100	0	62	0	0	0	100	0.00
46872--46933	4	15.5	4	74	12	56	66	0	0	33	0.92
46872--46932	24	2.5	24	100	0	122	65	0	0	34	0.93
47603--47638	1	36.0	1	100	0	72	0	0	0	100	0.00
55982--56008	1	27.0	1	100	0	54	0	0	100	0	0.00
61554--61594	13	2.8	15	82	17	59	48	0	2	48	1.14
61567--61601	13	2.6	13	95	4	61	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70706--70773	31	2.2	31	86	5	93	50	8	16	25	1.73
70768--70827	22	2.7	23	87	5	72	50	8	23	18	1.74
70812--70902	28	3.3	28	71	27	95	54	6	15	23	1.64
70840--70925	26	3.2	25	72	23	77	53	5	16	24	1.64
70811--70962	54	2.8	54	90	5	218	52	6	15	25	1.67
71148--71555	21	19.5	21	69	15	233	56	6	19	17	1.63
71148--71292	64	2.2	64	83	10	172	55	6	19	18	1.63
71198--71485	43	7.0	41	72	16	177	56	6	19	17	1.62
71259--71308	7	7.0	7	81	4	55	64	2	16	18	1.39
71344--71531	104	1.8	104	84	9	258	57	7	18	16	1.63
72911--72959	26	1.9	26	88	12	75	57	4	0	38	1.18
73064--73131	30	2.4	28	81	18	86	42	4	0	52	1.21
76680--76722	11	3.7	12	79	14	54	0	23	0	76	0.78
76683--76725	19	2.3	19	88	8	61	0	23	0	76	0.78
76788--76826	21	1.9	20	84	5	51	2	23	5	69	1.21
79587--79654	33	2.1	33	91	0	109	13	29	41	16	1.86

Tables:   1

The End!