Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012234.1 Corchorus capsularis cultivar CVL-1 contig12255, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56376

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60--109
21
2.3
21
86
10
66
52
10
8
30
1.64
425--469
21
2.1
22
91
4
74
40
8
28
22
1.84
6593--6650
28
2.0
29
87
9
84
32
15
1
50
1.55
13557--13928
123
3.0
122
88
3
550
37
20
20
21
1.95
16380--16435
21
2.9
18
75
17
58
42
14
10
32
1.80
16422--16553
45
3.0
44
77
9
135
40
17
7
34
1.78
16417--16544
22
5.8
22
69
10
82
40
16
8
34
1.79
16584--16879
22
13.3
22
69
14
146
34
16
10
38
1.83
17515--17557
15
2.8
15
85
3
50
4
20
39
34
1.74
20258--20301
21
2.1
21
87
8
63
56
6
2
34
1.38
21103--21230
64
2.0
64
83
8
163
31
25
3
40
1.71
25686--25739
22
2.5
21
79
8
63
31
9
12
46
1.74
25639--25793
62
2.5
62
86
4
206
33
10
10
45
1.73
25763--26325
22
25.6
22
68
15
211
35
15
10
39
1.81
25821--25866
24
2.0
24
91
4
76
26
10
6
56
1.58
26055--26135
23
3.5
23
91
0
126
39
12
7
40
1.71
26605--26700
37
2.6
36
79
9
95
58
8
19
13
1.61
26773--27085
156
2.0
157
96
1
576
43
7
13
35
1.71
28327--28368
2
22.0
2
80
9
52
45
0
4
50
1.23
30437--30475
21
1.9
20
89
5
60
20
28
15
35
1.93
32538--32576
2
19.5
2
100
0
78
51
0
0
48
1.00
32852--32895
20
2.2
20
83
0
61
11
43
2
43
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35007--35045
20
2.0
20
89
0
60
12
43
0
43
1.42
36020--36065
2
23.0
2
86
8
67
50
2
0
47
1.13
42290--42329
21
1.9
21
94
0
71
37
0
10
52
1.35
48080--48104
6
4.2
6
100
0
50
32
16
36
16
1.90
48432--48542
54
2.1
54
83
10
138
20
18
27
33
1.96
48111--48866
378
2.0
378
86
1
1059
30
16
25
28
1.96
54165--54195
15
2.1
14
94
5
53
83
0
12
3
0.75
54165--54203
20
1.9
19
90
10
60
79
0
12
7
0.93
55898--55941
21
2.1
21
83
8
54
18
31
9
40
1.81

Tables:   1

The End!