Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012235.1 Corchorus capsularis cultivar CVL-1 contig12256, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73490

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1072--1395
118
2.7
118
90
2
490
39
17
24
18
1.91
4969--5324
167
2.1
167
98
1
687
39
18
14
28
1.90
5274--5627
178
2.0
181
92
2
599
48
14
11
25
1.77
9153--9192
13
3.0
13
85
7
53
80
0
0
20
0.72
10486--10669
60
3.1
60
84
0
233
25
28
25
20
1.99
10972--10997
13
2.0
13
100
0
52
0
0
7
92
0.39
15026--15073
24
2.0
24
100
0
96
29
16
8
45
1.76
15135--15178
23
2.0
21
86
8
61
9
15
13
61
1.56
16544--16580
18
2.1
18
89
0
56
29
0
29
40
1.57
18914--18964
17
3.1
16
86
8
66
21
21
21
35
1.96
19434--19563
64
2.0
64
100
0
260
27
4
20
46
1.70
20370--20398
1
29.0
1
100
0
58
0
0
0
100
0.00
22746--22771
4
6.5
4
100
0
52
0
23
0
76
0.78
24164--24205
20
2.1
20
95
0
75
40
21
11
26
1.88
27350--27695
156
2.2
154
79
9
355
33
21
15
28
1.95
29124--29162
15
2.6
15
79
0
51
0
53
0
46
1.00
32413--32458
2
23.5
2
86
4
67
45
4
0
50
1.21
33001--33038
16
2.4
17
82
13
53
50
21
7
21
1.74
33445--34261
422
1.9
424
83
3
1054
30
14
13
41
1.85
34363--34440
16
4.9
16
83
9
106
7
17
37
37
1.79
34363--34440
31
2.5
31
87
6
113
7
17
37
37
1.79
34363--34462
47
2.1
47
81
7
114
7
18
40
35
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35300--35346
16
3.0
15
77
20
51
12
12
38
36
1.82
35274--35368
32
3.0
32
83
6
95
12
16
35
34
1.87
35308--35388
32
2.5
32
84
4
92
12
19
37
30
1.89
36429--36501
33
2.2
33
100
0
146
30
10
15
43
1.80
36644--36709
27
2.4
27
85
12
82
40
15
10
33
1.81
39068--39116
25
2.0
24
84
4
62
38
0
28
32
1.57
44645--44688
22
2.0
22
86
8
63
40
11
4
43
1.61
44939--44981
22
2.0
22
90
0
68
41
16
9
32
1.80
44965--45051
23
3.7
23
80
7
77
40
13
6
39
1.72
44987--45050
25
2.6
25
87
4
87
40
14
4
40
1.66
45107--45175
22
3.1
22
81
4
77
31
13
10
44
1.76
45325--45376
22
2.4
22
90
3
88
36
11
7
44
1.70
45457--45539
21
3.7
24
80
13
88
33
12
12
42
1.79
45299--45556
22
11.5
23
69
19
79
32
13
10
42
1.79
45771--45836
31
2.1
31
83
5
80
51
4
16
27
1.64
47535--47590
23
2.4
23
100
0
112
25
30
32
12
1.92
48104--48141
18
2.1
19
85
5
51
10
13
0
76
1.02
53455--53562
38
3.0
36
92
7
184
45
16
2
35
1.62
53715--53776
30
2.1
30
93
0
106
45
6
0
48
1.28
54437--54498
30
2.1
30
96
0
115
45
8
0
46
1.32
58457--58501
19
2.4
19
85
7
56
51
8
6
33
1.59
58471--58508
19
1.9
19
94
5
67
50
7
10
31
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71070--71105
15
2.3
15
95
4
63
61
19
5
13
1.52
71092--71122
11
2.7
12
95
5
55
58
25
9
6
1.54
73137--73186
3
16.7
3
87
8
75
62
2
0
36
1.07

Tables:   1

The End!