Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012236.1 Corchorus capsularis cultivar CVL-1 contig12257, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43732

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2181--2312
22
6.0
22
74
8
108
39
18
11
30
1.86
2175--2269
44
2.2
43
84
3
127
41
14
9
34
1.79
2388--2430
22
2.0
22
90
0
68
23
16
13
46
1.83
3031--3056
2
13.0
2
100
0
52
50
50
0
0
1.00
4884--4921
11
3.5
11
89
10
51
39
0
2
57
1.12
6316--6349
4
8.0
4
90
9
50
26
0
2
70
1.01
6324--6353
13
2.3
13
100
0
60
30
0
0
70
0.88
6316--6349
17
2.0
17
94
0
59
26
0
2
70
1.01
7346--7585
78
3.1
78
94
1
419
49
0
14
36
1.43
7527--7714
93
2.0
93
96
0
349
49
3
10
36
1.54
15787--15824
11
3.5
11
85
10
51
57
2
0
39
1.12
16210--16907
127
5.5
127
88
7
892
39
12
3
45
1.57
18112--18153
8
5.4
8
91
5
50
50
4
0
45
1.23
18120--18153
2
17.0
2
93
0
59
50
2
0
47
1.16
25514--25543
7
4.3
7
100
0
60
0
13
60
26
1.34
27358--28302
432
2.2
431
83
4
1152
41
11
14
32
1.82

Tables:   1

The End!