Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012243.1 Corchorus capsularis cultivar CVL-1 contig12264, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4710
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34


Found at i:3343 original size:7 final size:7

Alignment explanation


    Indices: 3331--3360  Score: 51
    Period size: 7  Copynumber: 4.3  Consensus size: 7

       3321 ACAAAAGTTT

                   
       3331 TTGATAA
          1 TTGATAA

                   
       3338 TTGATAA
          1 TTGATAA

              *    
       3345 TTAATAA
          1 TTGATAA

                   
       3352 TTGATAA
          1 TTGATAA

              
       3359 TT
          1 TT

       3361 AAGCAGTTTC


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   7   21  1.00

ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47


Consensus pattern (7 bp):   
TTGATAA

Found at i:3353 original size:14 final size:14

Alignment explanation


    Indices: 3334--3362  Score: 58
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       3324 AAAGTTTTTG

                          
       3334 ATAATTGATAATTA
          1 ATAATTGATAATTA

                          
       3348 ATAATTGATAATTA
          1 ATAATTGATAATTA

             
       3362 A
          1 A

       3363 GCAGTTTCCT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41


Consensus pattern (14 bp):   
ATAATTGATAATTA
Done.