Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012244.1 Corchorus capsularis cultivar CVL-1 contig12265, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15044
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33


Found at i:10169 original size:16 final size:15

Alignment explanation


    Indices: 10148--10190  Score: 50
    Period size: 16  Copynumber: 2.8  Consensus size: 15

      10138 TTTTTAAAAA

                         * 
      10148 AATAAAATAAAATTT
          1 AATAAAATAAAATAT

                    *       
      10163 CAATAAAAGAAAATAT
          1 -AATAAAATAAAATAT

             *          
      10179 ATTAAAATAAAA
          1 AATAAAATAAAA

      10191 ATTTTTAATT


Statistics
Matches: 23,  Mismatches: 4, Indels: 1
        0.82            0.14        0.04

Matches are distributed among these distances:
  15   10  0.43
  16   13  0.57

ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26


Consensus pattern (15 bp):   
AATAAAATAAAATAT
Done.