Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012245.1 Corchorus capsularis cultivar CVL-1 contig12266, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34046

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62--468
55
7.5
55
94
3
709
25
16
7
50
1.71
298--379
21
4.3
20
66
23
52
24
14
9
51
1.72
1358--1652
51
5.8
51
78
4
328
37
16
4
41
1.69
1353--1646
103
2.9
101
91
3
475
37
16
4
41
1.70
3788--3835
22
2.2
22
96
3
89
8
18
12
60
1.57
9752--9863
50
2.2
51
93
4
201
12
43
8
35
1.72
11417--11485
25
2.8
24
72
22
70
21
20
14
43
1.87
16922--16954
9
3.6
9
95
4
57
12
0
0
87
0.53
18739--18763
10
2.5
10
100
0
50
32
20
0
48
1.50
19160--19238
41
1.9
42
94
2
142
41
5
6
46
1.51
20212--20248
18
2.2
17
90
9
58
5
16
0
78
0.93
21434--21470
17
2.1
19
90
10
60
70
2
0
27
1.01
21531--21634
51
2.0
51
98
0
199
50
8
10
29
1.66
21881--21977
26
3.6
26
71
26
85
39
28
13
18
1.89
21907--22007
30
3.5
28
74
20
93
39
31
11
16
1.85
21880--22007
56
2.3
56
91
2
204
39
29
12
17
1.87
22045--22115
29
2.3
31
75
15
76
43
28
12
15
1.83
29272--29326
15
3.6
15
82
2
56
52
23
1
21
1.56
33708--33745
18
2.1
18
90
0
58
42
2
21
34
1.67

Tables:   1

The End!