genome.fa.s12246.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012246.1 Corchorus capsularis cultivar CVL-1 contig12267, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114177

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4481--4783	38	8.0	39	88	5	392	25	17	7	48	1.74
4518--4616	19	5.2	19	61	9	58	25	15	7	52	1.67
4477--4794	114	2.8	111	87	3	442	25	17	8	48	1.75
8083--8122	15	2.7	15	84	7	55	20	0	0	80	0.72
10272--10835	72	7.8	72	90	1	695	21	27	18	31	1.97
15728--15763	18	2.0	18	94	0	63	27	19	33	19	1.96
16088--16218	68	1.9	68	85	3	183	24	22	20	32	1.98
16176--16411	109	2.2	110	87	6	338	21	22	22	33	1.97
16217--16441	109	2.0	111	83	6	280	26	22	21	29	1.99
16418--16630	40	5.4	39	82	5	241	37	20	17	24	1.93
16446--16588	77	1.9	77	91	2	234	35	20	18	25	1.95
16860--16991	45	3.0	43	81	5	156	29	25	17	28	1.97
16977--17045	17	3.9	17	80	10	84	21	31	18	27	1.97
16996--17063	20	3.5	20	84	11	106	23	32	19	25	1.97
16978--17063	37	2.3	37	97	0	163	23	32	18	25	1.97
17160--17253	41	2.2	43	77	11	102	28	29	12	28	1.93
17217--17387	45	3.8	44	86	4	227	29	25	15	30	1.95
17217--17400	90	2.1	89	87	3	262	28	24	16	30	1.97
17630--17758	36	3.6	36	85	3	152	24	25	22	27	2.00
17911--18049	46	3.0	46	89	2	199	30	20	17	31	1.96
21009--21039	12	2.6	12	89	0	53	45	22	9	22	1.81
21867--21923	22	2.5	23	72	16	55	35	8	8	47	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22993--23024	16	2.0	16	93	0	55	62	0	9	28	1.26
23726--23820	43	2.2	43	83	3	120	38	11	15	33	1.84
24256--24286	2	15.0	2	93	6	53	48	0	3	48	1.17
24404--24462	30	2.0	30	89	0	91	44	16	3	35	1.65
24487--24518	2	16.0	2	100	0	64	50	0	0	50	1.00
25322--25400	31	2.5	31	80	8	106	37	18	11	31	1.87
25857--25924	32	2.1	34	83	5	86	10	27	16	45	1.79
26836--26863	13	2.2	13	100	0	56	28	7	14	50	1.69
28041--28119	40	2.0	41	85	9	110	18	15	8	56	1.64
28608--28635	13	2.2	13	100	0	56	46	7	0	46	1.30
31222--31481	105	2.5	106	87	3	359	42	9	8	40	1.67
39379--39479	21	4.8	21	73	8	73	22	22	5	48	1.72
39473--39538	15	4.5	15	71	17	57	21	18	4	56	1.59
39474--39544	22	3.2	22	84	7	108	21	19	4	54	1.60
39490--39644	35	4.3	35	82	6	161	19	22	2	55	1.55
39531--39686	85	1.8	85	86	5	226	19	22	2	55	1.55
39619--39658	14	2.9	14	84	0	53	22	22	2	52	1.59
39590--39686	50	2.0	49	87	2	140	20	21	3	54	1.58
39846--39925	26	3.2	25	70	20	78	25	18	6	50	1.70
39822--39990	56	3.4	48	82	13	214	25	18	7	48	1.73
39869--39995	56	2.3	56	98	1	247	25	16	7	51	1.70
39950--40137	34	5.3	34	76	12	166	29	14	5	51	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40036--40154	37	3.2	37	84	8	134	28	14	6	50	1.68
40836--40874	20	2.0	20	89	0	60	28	10	20	41	1.85
44760--44871	34	3.2	36	73	15	101	50	5	15	28	1.65
45131--45390	21	12.0	21	75	12	138	55	5	20	18	1.63
45206--45235	7	4.3	7	91	0	51	56	0	13	30	1.37
45137--45396	43	6.0	41	79	9	243	55	5	19	19	1.62
45173--45395	21	10.4	21	74	13	161	56	6	19	17	1.63
45405--45525	36	3.3	35	84	3	143	52	7	19	19	1.69
45389--45525	72	1.9	71	82	7	170	54	7	20	18	1.67
45462--45552	36	2.5	36	85	0	110	58	5	16	19	1.58
45405--45539	72	1.9	73	81	4	166	55	7	17	19	1.65
45554--45722	28	6.2	26	75	21	107	51	2	20	24	1.61
45566--45724	83	1.9	82	87	5	230	52	3	20	24	1.61
45583--45666	25	3.2	26	82	11	82	52	3	19	25	1.62
45583--45730	58	2.7	56	86	8	198	54	2	20	22	1.57
45773--45834	28	2.2	28	91	0	97	62	1	22	12	1.38
45783--45843	28	2.2	28	84	0	77	62	1	22	13	1.39
45837--45867	16	1.9	16	93	0	53	58	3	16	22	1.52
45831--45883	25	2.1	25	86	6	72	64	1	13	20	1.38
53124--53213	45	2.0	45	91	0	144	33	20	22	24	1.97
61827--61898	6	11.7	6	74	20	51	1	20	0	77	0.84
61826--61913	23	3.9	22	72	14	72	1	23	0	75	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61826--61915	33	2.7	31	80	13	92	1	24	0	74	0.89
61826--61908	5	16.4	5	72	17	57	1	22	0	75	0.87
69400--69440	21	2.0	21	90	0	64	21	12	31	34	1.91
69964--70254	155	1.9	154	81	9	360	36	18	15	30	1.92
79757--79790	1	34.0	1	100	0	68	0	0	0	100	0.00
81175--81230	27	2.1	27	100	0	112	41	32	7	19	1.79
81669--81696	13	2.2	13	100	0	56	42	14	7	35	1.73
98322--98920	300	2.0	299	90	1	941	28	18	22	30	1.97
102824--102848	13	1.9	13	100	0	50	48	4	0	48	1.20
105015--105092	28	2.8	28	90	0	129	17	14	25	42	1.87
110802--110877	27	2.8	27	81	2	80	14	13	28	43	1.83
113345--113441	48	2.0	48	97	0	185	30	7	19	42	1.78

Tables:   1

The End!