Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012257.1 Corchorus capsularis cultivar CVL-1 contig12278, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41290

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8830--8910
33
2.5
33
81
0
90
23
9
22
44
1.82
12654--12734
42
1.9
42
87
0
117
6
25
43
24
1.77
12725--12758
12
2.8
12
86
0
50
8
38
35
17
1.81
13223--13285
33
1.9
33
90
0
99
28
12
20
38
1.89
13223--13297
33
2.3
33
85
0
96
25
12
24
38
1.89
16270--16374
33
3.2
32
79
5
111
26
9
19
44
1.81
16323--16409
33
2.6
34
82
7
90
31
9
18
41
1.82
16392--16505
33
3.5
33
83
3
126
31
9
18
40
1.83
21440--22304
433
2.0
431
92
0
1444
30
24
15
29
1.95
28143--28314
41
4.1
42
78
8
140
34
16
13
36
1.87
28143--28330
44
4.5
41
78
10
152
34
16
13
35
1.88
28186--28336
44
3.5
43
82
7
173
33
15
14
36
1.89
30387--30426
2
19.5
2
85
14
55
47
5
0
47
1.24
30872--30996
60
2.0
62
95
4
227
24
15
17
42
1.88
36822--36849
2
14.0
2
100
0
56
50
0
50
0
1.00
38405--38520
53
2.2
54
83
9
148
14
19
29
36
1.92
40749--40806
30
1.9
30
89
6
91
22
31
18
27
1.97
41187--41290
33
3.1
33
91
1
163
44
14
10
30
1.79

Tables:   1

The End!