Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012259.1 Corchorus capsularis cultivar CVL-1 contig12280, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7058
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1677 original size:32 final size:33

Alignment explanation


    Indices: 1617--1678  Score: 99
    Period size: 32  Copynumber: 1.9  Consensus size: 33

       1607 ATACGTGAAC

                      *                      
       1617 CTTCTTTCAATAATTCTCCAATAATTGGATCAG
          1 CTTCTTTCAACAATTCTCCAATAATTGGATCAG

                                   *      
       1650 CTTCTTT-AACAATTCTCCAATAGTTGGAT
          1 CTTCTTTCAACAATTCTCCAATAATTGGAT

       1679 ATTCTTGAGA


Statistics
Matches: 27,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
  32   20  0.74
  33    7  0.26

ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40


Consensus pattern (33 bp):   
CTTCTTTCAACAATTCTCCAATAATTGGATCAG
Done.