Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012260.1 Corchorus capsularis cultivar CVL-1 contig12281, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73706

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--700
371
1.9
372
99
0
1384
32
20
26
20
1.97
3451--3532
31
2.6
31
80
5
94
26
3
9
59
1.46
4010--4062
16
3.3
15
74
10
52
43
35
11
9
1.73
4239--4296
19
2.9
19
82
5
71
36
10
22
31
1.88
6055--6130
39
1.9
39
91
0
125
43
13
13
30
1.81
6613--6642
10
3.0
10
95
0
51
76
0
3
20
0.92
6628--6683
20
2.8
20
79
12
55
67
3
7
21
1.30
8081--8121
15
2.9
14
86
13
57
31
0
0
68
0.90
10962--11016
26
2.1
26
83
6
67
29
21
10
38
1.88
11884--12019
66
2.1
63
89
4
200
16
20
13
49
1.79
13825--13850
5
5.2
5
100
0
52
19
0
19
61
1.35
14146--14200
26
2.1
26
83
6
67
29
21
10
38
1.88
14287--14321
16
2.2
16
100
0
70
11
25
17
45
1.81
24200--24255
24
2.3
24
90
0
85
12
23
19
44
1.84
24683--24930
88
2.8
87
81
13
256
36
6
9
47
1.62
24924--24980
16
3.4
15
78
21
60
38
0
14
47
1.44
24924--24983
19
3.3
19
67
21
56
38
0
13
48
1.42
26655--26736
42
2.0
42
87
0
119
25
21
29
23
1.99
28969--29026
25
2.3
25
84
0
80
44
3
50
1
1.29
29389--29415
14
1.9
14
100
0
54
44
7
3
44
1.49
31220--31284
35
2.0
33
88
11
98
21
10
21
46
1.82
33218--33282
30
2.1
31
91
2
105
29
20
3
47
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33228--33289
30
2.0
31
90
6
99
32
17
3
46
1.64
34321--34802
22
21.8
22
68
15
140
39
9
15
35
1.81
34389--34551
66
2.5
65
79
10
163
37
8
17
36
1.80
34610--34673
21
2.8
22
79
15
69
42
9
14
34
1.77
34726--34800
21
3.5
22
89
5
100
42
8
14
34
1.75
37404--37795
22
18.0
21
70
15
185
38
10
15
35
1.83
37422--37539
60
2.0
61
86
1
166
38
8
16
36
1.79
37404--37880
22
21.9
22
69
14
172
39
9
15
35
1.80
37482--37795
45
7.1
45
70
12
132
37
10
16
35
1.83
44789--44815
7
3.9
7
100
0
54
29
25
0
44
1.54
45678--45720
21
2.0
21
82
8
52
4
30
6
58
1.45
45699--45754
24
2.3
25
79
11
64
5
30
10
53
1.58
57986--58029
22
2.0
22
91
8
72
22
18
13
45
1.84
63784--63833
21
2.4
21
86
0
73
58
2
36
4
1.29
63825--63865
18
2.3
18
86
0
55
46
7
34
12
1.69

Tables:   1

The End!