Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01012261.1 Corchorus capsularis cultivar CVL-1 contig12282, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22599
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Found at i:301 original size:19 final size:19
Alignment explanation
Indices: 279--319 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
269 AAAAGTCAAT
*
279 AAAGATGAAAAAAGAAA-AA
1 AAAGAAGAAAAAA-AAAGAA
298 AAAGAAGAAAAAAAAAGAA
1 AAAGAAGAAAAAAAAAGAA
317 AAA
1 AAA
320 TTTGAATTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 3 0.15
19 17 0.85
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (19 bp):
AAAGAAGAAAAAAAAAGAA
Found at i:307 original size:12 final size:11
Alignment explanation
Indices: 286--319 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
276 AATAAAGATG
286 AAAAAAGAAAA
1 AAAAAAGAAAA
297 AAAAGAAG-AAA
1 AAAA-AAGAAAA
308 AAAAAAGAAAA
1 AAAAAAGAAAA
319 A
1 A
320 TTTGAATTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
10 3 0.14
11 15 0.71
12 3 0.14
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAA
Found at i:612 original size:27 final size:27
Alignment explanation
Indices: 581--640 Score: 111
Period size: 27 Copynumber: 2.2 Consensus size: 27
571 AAAATGTTTT
581 AGTCAAAACTCTTGAAAAGAGTTTTCG
1 AGTCAAAACTCTTGAAAAGAGTTTTCG
*
608 AGTCAAAACTTTTGAAAAGAGTTTTCG
1 AGTCAAAACTCTTGAAAAGAGTTTTCG
635 AGTCAA
1 AGTCAA
641 TTAAGAGTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.30
Consensus pattern (27 bp):
AGTCAAAACTCTTGAAAAGAGTTTTCG
Found at i:686 original size:18 final size:18
Alignment explanation
Indices: 663--702 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
653 AAGTGCAATC
663 AAAAAAAAAAAGAAAAAG
1 AAAAAAAAAAAGAAAAAG
* *
681 AAAAAAGAAACGAAAAAG
1 AAAAAAAAAAAGAAAAAG
699 AAAA
1 AAAA
703 GCAGCTTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.85, C:0.03, G:0.12, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAAAGAAAAAG
Found at i:1824 original size:40 final size:39
Alignment explanation
Indices: 1732--1876 Score: 195
Period size: 38 Copynumber: 3.7 Consensus size: 39
1722 AAGAAATCCC
* * * *
1732 AAAGTTGATTGGAAACAAGTCATCTTTCAACAATCATCG
1 AAAGTTGACTGGAAACAGGTCATCTTTCAGCAATAATCG
* * *
1771 -AAGTTGACTGGAAACATGTCACCTTTTAGCAATAATCG
1 AAAGTTGACTGGAAACAGGTCATCTTTCAGCAATAATCG
*
1809 AAAGGTTGACTGGAAACCGGTCATCTTTCAGCAATAATC-
1 AAA-GTTGACTGGAAACAGGTCATCTTTCAGCAATAATCG
1848 AAAGTTGACTGGAAACAGGTCATCTTTCA
1 AAAGTTGACTGGAAACAGGTCATCTTTCA
1877 AGTTATTAGA
Statistics
Matches: 93, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
38 57 0.61
39 5 0.05
40 31 0.33
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (39 bp):
AAAGTTGACTGGAAACAGGTCATCTTTCAGCAATAATCG
Found at i:2035 original size:170 final size:171
Alignment explanation
Indices: 1731--2046 Score: 422
Period size: 170 Copynumber: 1.8 Consensus size: 171
1721 AAAGAAATCC
*
1731 CAAAGTTGATTGGAAACAAGTCATCTTTCAACAATCATCGAAGTTGACTGGAAACATGTCACCTT
1 CAAAGTTGATTGGAAACAAGTCATCTTTCAACAATCATCGAAG-CGACTGGAAACATGTCACCTT
* * * *
1796 TTAGCAATAATCGAAAGGTTGACTGGAAACCGGTCATCTTTCAGCAATAATCAAAGTTGACTGGA
65 TCAGCAATAAT--AAAGGTTGACTGGAAACAGGTCATCTTTCAACAATAATCAAAGTTGACTAGA
1861 AACAGGTCATCTTTCAAGTTATTAGAGATCATCTTCCAAATTAT
128 AACAGGTCATCTTTCAAGTTATTAGAGATCATCTTCCAAATTAT
* * ** **
1905 CAAAGTTGATTGGAAACATGTCATCTTTCAACAATTATCTTA-CGACTGGAAACATGTCGTCTTT
1 CAAAGTTGATTGGAAACAAGTCATCTTTCAACAATCATCGAAGCGACTGGAAACATGTCACCTTT
* * * * *
1969 CAGCACTTAT-TAGGTTTGACTGGAAACATGTCATCTTTCAACAAGTTATC-AAGTTGACTAGAA
66 CAGCAATAATAAAGG-TTGACTGGAAACAGGTCATCTTTCAACAA-TAATCAAAGTTGACTAGAA
2032 ACAGGTCATCTTTCA
129 ACAGGTCATCTTTCA
2047 GCAATTATCT
Statistics
Matches: 124, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
169 3 0.02
170 53 0.43
171 4 0.03
172 26 0.21
174 38 0.31
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.31
Consensus pattern (171 bp):
CAAAGTTGATTGGAAACAAGTCATCTTTCAACAATCATCGAAGCGACTGGAAACATGTCACCTTT
CAGCAATAATAAAGGTTGACTGGAAACAGGTCATCTTTCAACAATAATCAAAGTTGACTAGAAAC
AGGTCATCTTTCAAGTTATTAGAGATCATCTTCCAAATTAT
Found at i:2052 original size:112 final size:113
Alignment explanation
Indices: 1901--2314 Score: 591
Period size: 112 Copynumber: 3.6 Consensus size: 113
1891 ATCTTCCAAA
* * * *
1901 TTATCAAAGTTGATTGGAAACATGTCATCTTTCAACAATTATCTTACGACTGGAAACATGTCGTC
1 TTATCAAAGTTGACTAGAAACAGGTCATCTTTCAACAATTATCTTACGACTGGAAACAGGTCGTC
*
1966 TTTCAGCACTTATTAGGTTTGACTGGAAACATGTCATCTTTCAACAAG
66 TTTCAGCACTTATTAGGTTTGACTGGAAACAGGTCATCTTTCAACAAG
* *
2014 TTATC-AAGTTGACTAGAAACAGGTCATCTTTCAGCAATTATCTTACGACTAGAAACAGGTCGTC
1 TTATCAAAGTTGACTAGAAACAGGTCATCTTTCAACAATTATCTTACGACTGGAAACAGGTCGTC
2078 TTTCAGCACTTATTAGGTTTGACTGGAAACAGGTCATCTTTCAACAAG
66 TTTCAGCACTTATTAGGTTTGACTGGAAACAGGTCATCTTTCAACAAG
* * *
2126 TTATCAAAATTGACTAGAAACAGGTCATC-TTCAGCAATTATCTTACGACTGGAAACATGTCGTC
1 TTATCAAAGTTGACTAGAAACAGGTCATCTTTCAACAATTATCTTACGACTGGAAACAGGTCGTC
* *
2190 TTTCAGCACTTATGAGGTTTGACTAGAAACAGGTCATCTTTCAACAAG
66 TTTCAGCACTTATTAGGTTTGACTGGAAACAGGTCATCTTTCAACAAG
* * * * **
2238 TTATC-AAGATCGACTGGAAAACAGTTCATCTTTCAACAAGTCATCAAGATCGACTGGAAACAGG
1 TTATCAAAG-TTGACTAG-AAACAGGTCATCTTTCAACAA-TTATC-TTA-CGACTGGAAACAGG
*
2302 TCATCTTTCAGCA
61 TCGTCTTTCAGCA
2315 GTTTTCAGTT
Statistics
Matches: 272, Mismatches: 22, Indels: 10
0.89 0.07 0.03
Matches are distributed among these distances:
111 2 0.01
112 195 0.72
113 38 0.14
114 7 0.03
115 4 0.01
116 1 0.00
117 25 0.09
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (113 bp):
TTATCAAAGTTGACTAGAAACAGGTCATCTTTCAACAATTATCTTACGACTGGAAACAGGTCGTC
TTTCAGCACTTATTAGGTTTGACTGGAAACAGGTCATCTTTCAACAAG
Found at i:2069 original size:74 final size:72
Alignment explanation
Indices: 1917--2325 Score: 274
Period size: 74 Copynumber: 5.4 Consensus size: 72
1907 AAGTTGATTG
* * * *
1917 GAAACATGTCATCTTTCAACAATTATC--TTACGACTGGAAACATGTCGTCTTTCAGCACTTAT-
1 GAAACAGGTCATCTTTCAACAATTATCAGTT--GACTGGAAACAGGTCATCTTTCAGCAATTATC
* *
1979 TAGGTTTGACTG
64 T---TATGACTA
* *
1991 GAAACATGTCATCTTTCAACAAGTTATCAAGTTGACTAGAAACAGGTCATCTTTCAGCAATTATC
1 GAAACAGGTCATCTTTCAACAA-TTATC-AGTTGACTGGAAACAGGTCATCTTTCAGCAATTATC
*
2056 TTACGACTA
64 TTATGACTA
* * * * *
2065 GAAACAGGTCGTCTTTCAGCACTTATTAGGTTTGACTGGAAACAGGTCATCTTTCAACAAGTTAT
1 GAAACAGGTCATCTTTCAACAATTATCA-G-TTGACTGGAAACAGGTCATCTTTCAGCAA-TTAT
**
2130 CAAAATTGACTA
63 C-TTA-TGACTA
* * * *
2142 GAAACAGGTCATC-TTCAGCAATTATC--TTACGACTGGAAACATGTCGTCTTTCAGCACTTATG
1 GAAACAGGTCATCTTTCAACAATTATCAGTT--GACTGGAAACAGGTCATCTTTCAGCAATTAT-
*
2204 AGGTT-TGACTA
63 --CTTATGACTA
* * * *
2215 GAAACAGGTCATCTTTCAACAAGTTATCAAGATCGACTGGAAAACAGTTCATCTTTCAACAAGTC
1 GAAACAGGTCATCTTTCAACAA-TTATC-AG-TTGACTGG-AAACAGGTCATCTTTCAGCAA-TT
** *
2280 ATCAAGATCGACTG
61 ATC-TTAT-GACTA
* * *
2294 GAAACAGGTCATCTTTCAGCAGTTTTCAGTTG
1 GAAACAGGTCATCTTTCAACAATTATCAGTTG
2326 CCCCCAAGCG
Statistics
Matches: 266, Mismatches: 43, Indels: 50
0.74 0.12 0.14
Matches are distributed among these distances:
72 3 0.01
73 28 0.11
74 102 0.38
75 15 0.06
76 41 0.15
77 26 0.10
78 23 0.09
79 28 0.11
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (72 bp):
GAAACAGGTCATCTTTCAACAATTATCAGTTGACTGGAAACAGGTCATCTTTCAGCAATTATCTT
ATGACTA
Found at i:2381 original size:34 final size:34
Alignment explanation
Indices: 2337--2472 Score: 202
Period size: 34 Copynumber: 3.9 Consensus size: 34
2327 CCCCAAGCGG
*
2337 AGCATGTCAACAACTTTTCAATTTACAACTTTAC
1 AGCATTTCAACAACTTTTCAATTTACAACTTTAC
* *
2371 AGCATTTCAACAACTTTTCAGTATTTTATAA-TTTAT
1 AGCATTTCAACAACTTTTCA--A-TTTACAACTTTAC
2407 AGCATTTCAACAACTTTTCAATTTACAACTTTAC
1 AGCATTTCAACAACTTTTCAATTTACAACTTTAC
*
2441 AGCATTTCAACAGCTTTTCAATTTACAACTTT
1 AGCATTTCAACAACTTTTCAATTTACAACTTT
2473 TCAAAATTTA
Statistics
Matches: 92, Mismatches: 6, Indels: 8
0.87 0.06 0.08
Matches are distributed among these distances:
33 6 0.07
34 55 0.60
36 25 0.27
37 6 0.07
ACGTcount: A:0.34, C:0.21, G:0.05, T:0.40
Consensus pattern (34 bp):
AGCATTTCAACAACTTTTCAATTTACAACTTTAC
Found at i:2481 original size:51 final size:49
Alignment explanation
Indices: 2337--2562 Score: 192
Period size: 51 Copynumber: 4.4 Consensus size: 49
2327 CCCCAAGCGG
* * *
2337 AGCATGTCAACAACTTTTCAATTTACAACTTTACAGCATTTCAACAACTTTTC
1 AGCATTTCAACAACTTTTCAATTTACAACTTTTCA--ATTT--ACAACTTTAC
* * *
2390 AGTATTT-TATAA-TTTAT-AGCATTTCAACAACTTTTCAATTTACAACTTTAC
1 AGCATTTCAACAACTTT-TCA--ATTT--ACAACTTTTCAATTTACAACTTTAC
*
2441 AGCATTTCAACAGCTTTTCAATTTACAACTTTTCAAAATTTACAACTTTAC
1 AGCATTTCAACAACTTTTCAATTTACAACTTTTC--AATTTACAACTTTAC
* *
2492 AGCATTTCAACAACTTTTCAATTTACAACTTTACAGCATTTCAACAACTTTTC
1 AGCATTTCAACAACTTTTCAATTTACAACTTTTCA--ATTT--ACAACTTTAC
*
2545 AGAATTT--ACAACTTTTCA
1 AGCATTTCAACAACTTTTCA
2563 GCATTTCAAT
Statistics
Matches: 145, Mismatches: 14, Indels: 30
0.77 0.07 0.16
Matches are distributed among these distances:
49 11 0.08
51 85 0.59
52 7 0.05
53 32 0.22
55 10 0.07
ACGTcount: A:0.35, C:0.21, G:0.04, T:0.39
Consensus pattern (49 bp):
AGCATTTCAACAACTTTTCAATTTACAACTTTTCAATTTACAACTTTAC
Found at i:2496 original size:85 final size:86
Alignment explanation
Indices: 2380--2563 Score: 291
Period size: 85 Copynumber: 2.1 Consensus size: 86
2370 CAGCATTTCA
* * * *
2380 ACAACTTTTCAGTATTTTATAATTTATAGCATTTCAACAACTTTTCAATTTACAACTTTACAGCA
1 ACAACTTTTCAGAAATTTACAATTTACAGCATTTCAACAACTTTTCAATTTACAACTTTACAGCA
*
2445 TTTCAACAGCTTTTC-AATTT
66 TTTCAACAACTTTTCAAATTT
2465 ACAACTTTTCA-AAATTTACAACTTTACAGCATTTCAACAACTTTTCAATTTACAACTTTACAGC
1 ACAACTTTTCAGAAATTTACAA-TTTACAGCATTTCAACAACTTTTCAATTTACAACTTTACAGC
2529 ATTTCAACAACTTTTCAGAATTT
65 ATTTCAACAACTTTTCA-AATTT
2552 ACAACTTTTCAG
1 ACAACTTTTCAG
2564 CATTTCAATT
Statistics
Matches: 90, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
84 7 0.08
85 67 0.74
87 16 0.18
ACGTcount: A:0.35, C:0.21, G:0.04, T:0.40
Consensus pattern (86 bp):
ACAACTTTTCAGAAATTTACAATTTACAGCATTTCAACAACTTTTCAATTTACAACTTTACAGCA
TTTCAACAACTTTTCAAATTT
Found at i:2569 original size:36 final size:35
Alignment explanation
Indices: 2465--2571 Score: 180
Period size: 34 Copynumber: 3.0 Consensus size: 35
2455 TTTTCAATTT
2465 ACAACTTTTCAAAATTTACAACTTTACAGCATTTCA
1 ACAACTTTTC-AAATTTACAACTTTACAGCATTTCA
2501 ACAACTTTTC-AATTTACAACTTTACAGCATTTCA
1 ACAACTTTTCAAATTTACAACTTTACAGCATTTCA
*
2535 ACAACTTTTCAGAATTTACAACTTTTCAGCATTTCA
1 ACAACTTTTCA-AATTTACAACTTTACAGCATTTCA
2571 A
1 A
2572 TTCACAACTT
Statistics
Matches: 68, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
34 34 0.50
36 34 0.50
ACGTcount: A:0.36, C:0.22, G:0.04, T:0.37
Consensus pattern (35 bp):
ACAACTTTTCAAATTTACAACTTTACAGCATTTCA
Found at i:2578 original size:23 final size:23
Alignment explanation
Indices: 2547--2595 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
2537 AACTTTTCAG
* *
2547 AATTTACAACTTTTCAGCATTTC
1 AATTCACAACTTTTCAGCATTCC
*
2570 AATTCACAACTTTTGAGCATTCC
1 AATTCACAACTTTTCAGCATTCC
2593 AAT
1 AAT
2596 AACTTTGCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.33, C:0.22, G:0.06, T:0.39
Consensus pattern (23 bp):
AATTCACAACTTTTCAGCATTCC
Found at i:14664 original size:109 final size:110
Alignment explanation
Indices: 14472--14672 Score: 386
Period size: 109 Copynumber: 1.8 Consensus size: 110
14462 TAGTTATTTT
14472 GGTGCTTGTATTTTTCTTTAAATCCAATAGTTCATTGCACTTTGTATTGTTTGGTATGTGTGCTT
1 GGTGCTTGTATTTTTCTTTAAATCCAATAGTTCATTGCACTTTGTATTGTTTGGTATGTGTGCTT
14537 ATTTAATAGATTCAATTGAATAAACAATACAATTAAAAATTAATA
66 ATTTAATAGATTCAATTGAATAAACAATACAATTAAAAATTAATA
14582 GGTGCTTGTATTTTTCTTTAAATCCAATAGTTCATTGCA-TTTGTATTGTTTGGTATGTGTGCTT
1 GGTGCTTGTATTTTTCTTTAAATCCAATAGTTCATTGCACTTTGTATTGTTTGGTATGTGTGCTT
*
14646 ATTTAATAGGTTCAATTGAATAAACAA
66 ATTTAATAGATTCAATTGAATAAACAA
14673 CAAAACTAAT
Statistics
Matches: 90, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
109 51 0.57
110 39 0.43
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.45
Consensus pattern (110 bp):
GGTGCTTGTATTTTTCTTTAAATCCAATAGTTCATTGCACTTTGTATTGTTTGGTATGTGTGCTT
ATTTAATAGATTCAATTGAATAAACAATACAATTAAAAATTAATA
Found at i:14907 original size:109 final size:109
Alignment explanation
Indices: 14753--14971 Score: 384
Period size: 109 Copynumber: 2.0 Consensus size: 109
14743 AAAGATGATA
* *
14753 AGGTGCTTGTATTTTTCTTTAAATCCAATAGTTCATTGCGCTTTGTATTGTTTGATATGTGTGCT
1 AGGTGCTTGTATTTTTCTATAAATCCAATAGTTCATTGCACTTTGTATTGTTTGATATGTGTGCT
*
14818 TATTTAATAGGTTCAATCGAATAAACAACACAATTAATGATAAT
66 TATTTAATAGGTTCAATCGAATAAACAACACAATTAATAATAAT
* *
14862 AGGTGCTTGTATTTTTCTATAAATCCAATAGTTCATTGCATTTTGTATTGTTTGGTATGTGTGCT
1 AGGTGCTTGTATTTTTCTATAAATCCAATAGTTCATTGCACTTTGTATTGTTTGATATGTGTGCT
*
14927 TATTTAATAGGTTCAATTGAATAAACAACACAATTAATAATAAT
66 TATTTAATAGGTTCAATCGAATAAACAACACAATTAATAATAAT
14971 A
1 A
14972 TATAATAGAA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
109 104 1.00
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.42
Consensus pattern (109 bp):
AGGTGCTTGTATTTTTCTATAAATCCAATAGTTCATTGCACTTTGTATTGTTTGATATGTGTGCT
TATTTAATAGGTTCAATCGAATAAACAACACAATTAATAATAAT
Found at i:14976 original size:282 final size:280
Alignment explanation
Indices: 14472--15033 Score: 1000
Period size: 282 Copynumber: 2.0 Consensus size: 280
14462 TAGTTATTTT
*
14472 GGTGCTTGTATTTTTCTTTAAATCCAATAGTTCATTGCACTTTGTATTGTTTGGTATGTGTGCTT
1 GGTGCTTGTATTTTTCTTTAAATCCAATAGTTCATTGCACTTTGTATTGTTTGATATGTGTGCTT
* * *
14537 ATTTAATAGATTCAATTGAATAAACAATACAATTAAAAATTAATAGGTGCTTGTATTTTTCTTTA
66 ATTTAATAGATTCAATCGAATAAACAACACAATTAAAAATTAATAGGTGCTTGTATTTTTCTATA
14602 AATCCAATAGTTCATTGCATTTGTATTGTTTGGTATGTGTGCTTATTTAATAGGTTCAATTGAAT
131 AATCCAATAGTTCATTGCATTTGTATTGTTTGGTATGTGTGCTTATTTAATAGGTTCAATTGAAT
14667 AAACAACAAAACTAATAATAATATATAATAGAATTATTTTATATAATAATAATAAAACTCACTAT
196 AAACAACAAAACTAATAATAATATATAATAGAATTA-TTT-TATAATAATAATAAAACTCACTAT
14732 TTAATGAACACAAAGATGATAA
259 TTAATGAACACAAAGATGATAA
*
14754 GGTGCTTGTATTTTTCTTTAAATCCAATAGTTCATTGCGCTTTGTATTGTTTGATATGTGTGCTT
1 GGTGCTTGTATTTTTCTTTAAATCCAATAGTTCATTGCACTTTGTATTGTTTGATATGTGTGCTT
* **
14819 ATTTAATAGGTTCAATCGAATAAACAACACAATTAATGA-TAATAGGTGCTTGTATTTTTCTATA
66 ATTTAATAGATTCAATCGAATAAACAACACAATTAAAAATTAATAGGTGCTTGTATTTTTCTATA
14883 AATCCAATAGTTCATTGCATTTTGTATTGTTTGGTATGTGTGCTTATTTAATAGGTTCAATTGAA
131 AATCCAATAGTTCATTGCA-TTTGTATTGTTTGGTATGTGTGCTTATTTAATAGGTTCAATTGAA
* *
14948 TAAACAACACAATTAATAATAATATATAATAGAATTATTTTATAATAATAATAAAACTCACTATT
195 TAAACAACAAAACTAATAATAATATATAATAGAATTATTTTATAATAATAATAAAACTCACTATT
15013 TAATGAACACAAAGATGATAA
260 TAATGAACACAAAGATGATAA
15034 ACATTAGGAA
Statistics
Matches: 269, Mismatches: 10, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
280 46 0.17
281 46 0.17
282 177 0.66
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.41
Consensus pattern (280 bp):
GGTGCTTGTATTTTTCTTTAAATCCAATAGTTCATTGCACTTTGTATTGTTTGATATGTGTGCTT
ATTTAATAGATTCAATCGAATAAACAACACAATTAAAAATTAATAGGTGCTTGTATTTTTCTATA
AATCCAATAGTTCATTGCATTTGTATTGTTTGGTATGTGTGCTTATTTAATAGGTTCAATTGAAT
AAACAACAAAACTAATAATAATATATAATAGAATTATTTTATAATAATAATAAAACTCACTATTT
AATGAACACAAAGATGATAA
Done.