Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012262.1 Corchorus capsularis cultivar CVL-1 contig12283, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47127

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2776--2824
21
2.3
22
83
13
59
40
12
14
32
1.83
3519--3554
6
6.0
6
86
0
54
0
2
16
80
0.83
3521--3560
12
3.4
12
89
3
55
0
2
20
77
0.88
8366--8490
44
2.8
45
87
2
180
37
6
20
36
1.78
8366--8512
45
3.3
44
83
5
179
36
7
19
36
1.80
9037--9064
11
2.5
11
100
0
56
78
0
21
0
0.75
9030--9063
10
3.3
10
88
8
50
76
0
23
0
0.79
9030--9071
21
2.0
21
85
0
57
78
0
21
0
0.75
9900--10008
50
2.2
49
86
3
146
33
17
13
34
1.89
10257--10317
29
2.1
29
96
0
113
40
19
11
27
1.86
10562--10803
69
3.5
69
80
5
308
24
30
19
24
1.98
10562--10854
69
4.2
69
79
7
306
24
29
19
26
1.99
10562--10854
139
2.1
139
96
0
541
24
29
19
26
1.99
10941--11082
47
3.0
48
85
2
196
21
23
19
34
1.96
11152--11208
5
11.2
5
96
3
105
80
0
0
19
0.71
36488--36531
16
2.8
16
100
0
88
20
18
27
34
1.96
40955--41036
31
2.7
31
83
5
96
29
17
19
34
1.94
41072--41102
16
1.9
16
93
0
53
12
3
0
83
0.75
41181--41248
31
2.3
31
84
5
86
22
17
19
41
1.91
46395--46423
2
14.5
2
100
0
58
48
0
0
51
1.00

Tables:   1

The End!