Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012263.1 Corchorus capsularis cultivar CVL-1 contig12284, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8065
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.35


Found at i:4360 original size:18 final size:18

Alignment explanation


    Indices: 4333--4367  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       4323 TTTGGTTAGG

                       *      
       4333 TATGGATAAAGGAACATT
          1 TATGGATAAAGAAACATT

                 *           
       4351 TATGGGTAAAGAAACAT
          1 TATGGATAAAGAAACAT

       4368 CAACCCTGAC


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.46, C:0.06, G:0.23, T:0.26


Consensus pattern (18 bp):   
TATGGATAAAGAAACATT

Found at i:7075 original size:16 final size:17

Alignment explanation


    Indices: 7037--7075  Score: 71
    Period size: 17  Copynumber: 2.4  Consensus size: 17

       7027 TCATCAAATC

                             
       7037 AACCTATTTGCCAATAG
          1 AACCTATTTGCCAATAG

                             
       7054 AACCTATTTGCCAATA-
          1 AACCTATTTGCCAATAG

                  
       7070 AACCTA
          1 AACCTA

       7076 AGGAATATCA


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  16    6  0.27
  17   16  0.73

ACGTcount: A:0.38, C:0.26, G:0.08, T:0.28


Consensus pattern (17 bp):   
AACCTATTTGCCAATAG
Done.