genome.fa.s12265.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012265.1 Corchorus capsularis cultivar CVL-1 contig12286, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26332

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4385--4413	14	2.1	14	100	0	58	41	27	0	31	1.56
6284--6319	14	2.5	14	90	4	54	75	8	2	13	1.15
7606--7744	26	5.3	26	75	12	140	53	7	20	17	1.68
7606--7734	27	4.9	26	79	11	147	55	6	20	16	1.64
7602--7734	53	2.5	53	90	2	205	55	6	21	16	1.64
7808--8096	35	8.1	35	70	19	179	53	3	23	19	1.60
7828--7891	22	3.0	20	78	10	65	54	4	20	20	1.62
8028--8091	19	3.3	19	82	12	67	59	3	18	18	1.51
8047--8286	20	11.4	22	73	12	184	54	3	19	22	1.60
8047--8287	21	11.4	20	75	14	184	54	3	19	21	1.60
8047--8286	42	5.7	41	78	12	229	54	3	19	22	1.60
8213--8309	14	6.9	14	71	9	54	55	3	21	19	1.56
8333--8390	27	2.1	29	83	6	75	51	3	24	20	1.62
8366--8490	42	3.0	43	84	5	157	54	4	19	21	1.62
8388--8490	22	4.8	22	78	9	106	55	5	15	23	1.62
8443--8476	7	4.9	7	85	0	50	55	2	23	17	1.55
8384--8490	43	2.5	42	90	1	169	55	5	16	22	1.62
9298--9337	21	2.0	21	85	5	55	27	22	5	45	1.73
11470--11514	20	2.2	20	100	0	90	13	22	24	40	1.90
11470--11538	20	3.3	21	89	4	70	14	26	18	40	1.89
20013--20095	33	2.6	31	78	12	89	38	19	10	31	1.86
20071--20122	24	2.2	24	86	6	70	40	21	7	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20101--20194	33	2.8	33	83	0	125	43	20	10	25	1.84
21695--21728	8	4.1	8	85	7	50	23	2	14	58	1.50
24638--24711	35	2.1	34	85	9	96	22	5	13	58	1.56

Tables:   1

The End!