Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012266.1 Corchorus capsularis cultivar CVL-1 contig12287, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34925

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40--90
2
26.0
2
92
4
77
3
49
0
47
1.20
2485--2524
18
2.2
18
86
4
53
45
5
20
30
1.72
4647--4671
12
2.1
12
100
0
50
40
8
32
20
1.81
14422--14455
13
2.6
13
86
13
52
47
0
47
5
1.26
15408--15478
27
2.7
26
86
8
99
46
21
14
18
1.83
21311--21346
19
1.9
18
88
5
54
33
22
2
41
1.68
22567--22624
21
2.8
21
97
0
107
46
8
20
24
1.78
23075--23145
36
2.0
36
88
2
108
46
14
21
18
1.83
24319--24357
19
2.1
19
90
4
62
12
48
5
33
1.63
27914--28254
48
7.0
48
86
3
373
30
14
29
25
1.95
32266--32345
37
2.2
38
80
11
94
32
32
15
20
1.93
33277--33302
2
13.0
2
100
0
52
50
0
0
50
1.00
34361--34404
14
3.1
14
80
6
54
79
0
18
2
0.83

Tables:   1

The End!