Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012267.1 Corchorus capsularis cultivar CVL-1 contig12288, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56014

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
602--641
17
2.4
17
83
8
55
75
0
25
0
0.81
601--644
18
2.5
17
85
3
61
75
0
25
0
0.81
608--644
12
3.0
13
80
11
51
72
0
27
0
0.84
8580--8612
11
3.0
11
95
0
57
12
9
0
78
0.95
13274--13429
22
7.1
22
75
8
95
42
8
16
33
1.78
13773--13874
41
2.5
40
81
10
109
13
13
23
49
1.78
14716--14767
2
28.0
2
79
14
58
46
0
0
53
1.00
14716--14766
19
2.7
19
84
6
68
45
0
0
54
0.99
14910--15048
70
2.0
71
91
2
226
32
22
12
33
1.91
15060--15105
20
2.3
20
92
0
74
15
32
34
17
1.91
15148--15199
24
2.2
24
100
0
104
38
25
3
32
1.74
21986--22012
13
2.1
13
100
0
54
40
7
14
37
1.74
22725--22770
13
3.0
16
75
21
53
13
26
6
54
1.62
31048--31778
35
20.7
35
88
3
1018
38
10
17
33
1.83
37205--37373
93
1.9
89
83
9
218
28
12
21
36
1.90
39103--39295
55
3.4
54
77
9
188
21
23
18
36
1.95
39141--39305
55
2.9
57
81
7
201
22
26
17
33
1.96
40073--40387
58
5.1
58
85
10
314
17
20
18
43
1.88
40196--40383
69
2.8
68
88
6
274
18
18
20
42
1.89
41129--41153
12
2.1
12
100
0
50
60
8
24
8
1.52
44748--44807
22
2.7
23
87
5
72
51
3
21
23
1.62
44803--44944
55
2.6
54
80
8
157
49
8
19
23
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45266--45498
21
11.2
20
71
16
136
54
6
20
18
1.65
45329--45499
43
4.0
42
77
8
125
56
6
20
16
1.62
45252--45398
78
1.9
78
81
5
181
53
4
21
21
1.64
45329--45581
22
11.3
22
75
14
191
55
5
20
17
1.62
45329--45500
21
8.0
21
76
14
140
56
6
20
16
1.62
45564--45603
16
2.6
16
84
4
55
55
7
15
22
1.65
45606--45695
21
4.3
21
76
8
76
52
8
18
20
1.72
45760--45822
27
2.3
27
78
5
83
60
0
20
19
1.37
45767--45829
27
2.2
28
83
8
83
61
0
20
17
1.34
52362--52426
33
2.0
33
90
0
103
18
21
18
41
1.90
53467--53517
16
3.0
16
81
15
66
11
17
21
49
1.79
53516--53544
14
2.1
14
100
0
58
13
20
13
51
1.75
54301--54342
14
2.8
15
85
7
50
26
4
2
66
1.23

Tables:   1

The End!