genome.fa.s12268.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012268.1 Corchorus capsularis cultivar CVL-1 contig12289, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98341

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6354--6387	6	5.7	6	100	0	68	82	0	17	0	0.67
15888--15917	6	5.0	6	100	0	60	16	0	16	66	1.25
23384--23912	154	3.4	154	78	10	519	30	15	21	33	1.94
24239--24272	17	2.0	17	94	0	59	20	35	11	32	1.89
25149--25251	22	4.8	21	73	13	84	44	9	8	36	1.68
27745--27805	27	2.3	26	81	18	72	42	1	13	42	1.53
27905--27971	31	2.1	31	83	8	82	31	17	2	47	1.63
28307--28535	110	2.1	111	97	0	433	34	16	10	37	1.83
28719--28924	22	9.3	22	72	11	111	33	9	19	37	1.84
28717--28869	66	2.3	66	83	5	177	34	10	17	37	1.84
28717--28870	22	7.0	22	78	8	129	34	10	18	37	1.85
29139--29268	22	5.8	24	70	19	75	39	10	13	36	1.80
29166--29329	22	7.4	22	71	11	111	41	10	14	34	1.79
29369--29747	22	17.8	22	66	15	109	40	8	15	35	1.79
29643--29745	23	4.5	22	76	10	91	38	7	13	39	1.74
29629--29746	46	2.6	47	81	5	127	39	8	13	38	1.75
29714--29759	22	2.1	22	83	0	56	39	10	10	39	1.76
29829--30216	44	9.0	42	68	13	159	37	9	15	36	1.81
29828--29974	66	2.2	65	78	5	161	40	8	16	34	1.79
29820--30079	22	12.0	22	73	9	124	40	8	15	35	1.79
30311--30370	22	2.7	22	97	0	111	45	8	6	40	1.61
30317--30356	12	3.5	12	75	25	50	45	7	10	37	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30788--30820	17	1.9	17	93	0	57	21	6	9	63	1.45
31702--31733	2	17.0	2	87	12	50	50	0	0	50	1.00
31701--31731	16	1.9	16	100	0	62	48	0	0	51	1.00
31702--31736	18	1.9	18	100	0	70	48	0	0	51	1.00
31885--31991	54	2.0	53	83	5	135	30	7	8	53	1.59
32918--32950	16	2.1	16	88	5	50	87	0	12	0	0.53
32918--32942	13	1.9	13	100	0	50	88	0	12	0	0.53
40709--40733	13	1.9	13	100	0	50	48	16	24	12	1.79
40899--40973	27	2.8	27	91	0	114	38	26	17	17	1.92
53390--53582	99	2.0	97	90	4	307	41	8	18	31	1.81
54395--54492	37	2.6	37	85	3	126	25	29	16	28	1.97
54395--54517	37	3.4	35	80	7	120	25	29	17	27	1.98
54709--54814	39	2.7	39	91	1	169	38	18	16	26	1.91
54849--54987	36	3.7	36	75	10	136	31	20	18	28	1.97
54836--54987	38	4.0	38	76	9	159	32	19	17	29	1.95
55024--55073	23	2.1	24	88	3	75	28	18	6	48	1.71
55082--55133	23	2.3	23	93	0	86	34	19	3	42	1.69
55010--55518	51	9.8	51	86	10	685	33	21	4	39	1.75
55109--55509	34	11.9	31	71	18	193	34	21	4	39	1.74
55445--55554	57	1.9	57	85	3	150	35	23	3	37	1.73
59634--59684	21	2.4	21	83	0	66	37	9	39	13	1.78
59647--59689	21	2.0	21	95	0	77	34	9	44	11	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64849--64881	13	2.5	13	86	13	50	72	3	24	0	0.98
65077--65111	2	17.5	2	93	0	61	51	2	0	45	1.16
65365--65402	13	2.9	13	92	7	60	81	7	10	0	0.87
67325--67385	32	1.9	32	86	0	86	21	6	29	42	1.78
67599--67641	23	1.9	23	90	4	70	4	13	32	48	1.63
67661--67718	16	3.7	16	70	19	50	5	12	29	53	1.59
87880--87910	7	4.6	7	92	8	55	87	0	0	12	0.55
87880--87910	13	2.3	13	94	5	53	87	0	0	12	0.55
91678--91754	39	2.0	37	90	5	118	44	3	10	41	1.57

Tables:   1

The End!