Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012270.1 Corchorus capsularis cultivar CVL-1 contig12291, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7103
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.39


Found at i:3605 original size:38 final size:37

Alignment explanation


    Indices: 3554--3627  Score: 121
    Period size: 38  Copynumber: 2.0  Consensus size: 37

       3544 ATAACATCTT

                                                  
       3554 AAACAATTTTAAGTATTTTTTTATGTTGCAAAAAAAAA
          1 AAACAATTTTAAGTATTTTTTTATGTT-CAAAAAAAAA

                 *                     *        
       3592 AAACAGTTTTAAGTATTTTTTTATGTTTAAAAAAAA
          1 AAACAATTTTAAGTATTTTTTTATGTTCAAAAAAAA

       3628 GTTTTAAGTA


Statistics
Matches: 34,  Mismatches: 2, Indels: 1
        0.92            0.05        0.03

Matches are distributed among these distances:
  37    8  0.24
  38   26  0.76

ACGTcount: A:0.46, C:0.04, G:0.08, T:0.42


Consensus pattern (37 bp):   
AAACAATTTTAAGTATTTTTTTATGTTCAAAAAAAAA
Done.