Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012271.1 Corchorus capsularis cultivar CVL-1 contig12292, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19226

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1329--1420
33
2.8
33
91
1
141
25
25
21
28
1.99
1329--1456
33
3.9
33
85
4
134
25
25
21
28
1.99
1378--1453
32
2.3
32
84
6
91
25
27
21
26
1.99
1885--1927
2
21.5
2
100
0
86
51
0
0
48
1.00
2160--2207
25
1.9
25
95
0
87
25
6
25
43
1.77
2989--3076
31
2.8
31
91
1
131
20
32
27
19
1.97
3033--3118
42
2.0
42
97
0
163
23
38
23
15
1.92
3075--3152
31
2.5
31
91
0
120
23
33
21
21
1.97
3008--3147
73
1.9
73
94
0
244
22
34
23
20
1.97
3331--3421
31
2.9
31
93
0
155
17
28
23
30
1.97
3411--3573
81
2.0
82
90
3
258
23
26
17
31
1.97
5417--5459
13
3.2
13
81
15
52
60
6
0
32
1.23
9033--9081
22
2.4
21
83
12
66
32
6
22
38
1.79
9033--9085
21
2.5
22
88
8
76
32
7
20
39
1.81
9168--9477
154
2.0
155
92
0
523
28
26
12
33
1.92
9976--10038
30
2.1
30
90
0
99
33
11
28
26
1.91
16132--16166
2
17.5
2
100
0
70
51
0
0
48
1.00
17342--17369
2
14.0
2
100
0
56
50
0
0
50
1.00
19192--19226
2
17.5
2
100
0
70
51
0
0
48
1.00

Tables:   1

The End!