Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012272.1 Corchorus capsularis cultivar CVL-1 contig12293, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14557
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.35


Found at i:3083 original size:19 final size:20

Alignment explanation


    Indices: 3059--3096  Score: 60
    Period size: 19  Copynumber: 1.9  Consensus size: 20

       3049 TGATTACTTA

                                
       3059 AAAACAATTAT-AGGTTATC
          1 AAAACAATTATAAGGTTATC

                     *         
       3078 AAAACAATTGTAAGGTTAT
          1 AAAACAATTATAAGGTTAT

       3097 TTATAAATTC


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  19   10  0.59
  20    7  0.41

ACGTcount: A:0.47, C:0.08, G:0.13, T:0.32


Consensus pattern (20 bp):   
AAAACAATTATAAGGTTATC

Found at i:7651 original size:13 final size:13

Alignment explanation


    Indices: 7633--7668  Score: 72
    Period size: 13  Copynumber: 2.8  Consensus size: 13

       7623 CGCAATTTAA

                         
       7633 AAAAGCACTTCTC
          1 AAAAGCACTTCTC

                         
       7646 AAAAGCACTTCTC
          1 AAAAGCACTTCTC

                      
       7659 AAAAGCACTT
          1 AAAAGCACTT

       7669 TTTCCAAACC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   23  1.00

ACGTcount: A:0.42, C:0.28, G:0.08, T:0.22


Consensus pattern (13 bp):   
AAAAGCACTTCTC
Done.