Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012273.1 Corchorus capsularis cultivar CVL-1 contig12294, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36560

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
351--388
15
2.6
14
88
8
58
28
21
7
42
1.81
1080--1309
70
3.2
70
81
12
270
37
12
0
49
1.46
1080--1315
78
3.2
76
86
8
310
37
11
0
50
1.45
4335--4375
19
2.2
19
86
8
57
26
0
0
73
0.84
4334--4384
16
3.1
16
83
13
59
29
0
0
70
0.87
4335--4379
18
2.6
18
82
13
58
28
0
0
71
0.87
4337--4399
24
2.5
26
79
12
67
30
1
0
68
0.99
4344--4381
15
2.5
15
84
16
51
28
0
0
71
0.87
4470--4511
21
2.1
19
86
8
57
38
2
0
59
1.10
4502--4539
10
4.0
10
80
13
53
42
0
2
55
1.14
4551--4591
17
2.4
17
88
8
57
43
4
0
51
1.23
4475--4594
18
6.3
19
70
15
70
40
4
0
54
1.26
4495--4605
9
12.5
8
71
20
55
42
4
0
52
1.28
5559--5632
32
2.3
32
95
0
130
13
9
39
37
1.77
5581--5632
16
3.2
16
78
10
70
13
9
38
38
1.77
5559--5642
32
2.6
31
84
3
105
11
9
39
39
1.75
5788--5892
16
6.6
16
80
0
120
3
13
32
50
1.59
5788--5891
32
3.2
32
95
0
190
3
12
32
50
1.58
5788--5909
64
1.9
64
86
3
174
4
13
34
46
1.65
14059--14089
6
5.3
6
92
7
55
16
0
0
83
0.64
14046--14093
17
2.9
16
78
6
60
10
6
4
79
1.05
14063--14088
11
2.4
11
100
0
52
15
0
0
84
0.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22792--22827
19
1.9
20
88
11
58
69
0
0
30
0.89
24151--24186
18
2.1
18
89
5
56
61
8
19
11
1.54
24778--24817
19
2.2
18
86
4
53
30
20
5
45
1.72
31852--31876
10
2.5
10
100
0
50
48
20
8
24
1.76
32791--32823
13
2.5
13
95
0
57
18
12
9
60
1.57
33237--33316
42
2.0
40
82
5
97
31
10
2
56
1.46
34477--34520
15
2.6
17
82
10
56
40
15
11
31
1.83
36134--36181
20
2.4
20
93
6
80
12
10
31
45
1.76

Tables:   1

The End!