Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012277.1 Corchorus capsularis cultivar CVL-1 contig12298, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5421

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
328--585
127
2.0
127
99
0
507
24
13
29
32
1.93
2836--3364
22
24.6
22
67
13
135
36
15
9
38
1.80
3112--3180
23
3.0
23
78
4
77
39
15
7
37
1.76
3120--3203
23
3.6
24
77
7
93
39
11
8
40
1.72
3112--3203
46
2.0
46
82
4
114
38
15
7
39
1.76
3169--3280
39
2.9
38
77
2
98
35
13
8
41
1.76
3446--3700
22
11.6
23
69
13
128
33
13
9
42
1.77
3741--3842
22
4.6
22
75
11
75
40
19
5
34
1.76
3950--4036
22
4.0
21
77
11
79
36
17
10
35
1.84
4171--4261
38
2.5
36
82
10
116
54
10
20
13
1.68
4305--4354
15
3.5
15
68
15
52
58
0
8
34
1.28
4774--4828
16
3.5
15
78
9
56
49
38
7
5
1.54

Tables:   1

The End!