Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012280.1 Corchorus capsularis cultivar CVL-1 contig12301, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25017

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
330--389
22
2.7
22
79
5
68
36
11
15
36
1.83
373--407
18
1.9
18
94
0
61
40
8
14
37
1.76
390--476
23
3.8
23
93
0
138
40
17
4
37
1.70
503--646
22
6.5
22
69
18
75
36
11
9
42
1.75
634--684
19
2.6
20
84
6
68
27
13
11
47
1.78
749--806
22
2.6
22
86
0
80
39
17
3
39
1.66
8130--8205
32
2.4
32
90
0
116
51
28
13
6
1.65
8126--8205
16
5.0
16
75
0
70
51
30
12
6
1.64
8354--8453
32
3.2
32
85
2
148
38
35
9
18
1.82
8366--8446
15
5.2
15
76
8
90
39
30
8
20
1.83
8917--8956
19
2.1
19
90
0
62
17
12
5
65
1.44
9354--9482
32
4.1
32
93
2
226
48
24
13
13
1.79
9482--9510
14
2.1
14
100
0
58
37
27
6
27
1.82
14234--14271
11
3.5
11
85
10
51
57
2
0
39
1.12
15067--15398
141
2.4
141
91
2
535
36
10
11
42
1.75
16654--16693
21
1.9
21
89
0
62
57
5
0
37
1.21
17295--17352
30
1.9
30
89
6
91
46
13
3
36
1.61
17704--18035
141
2.4
141
89
3
508
37
9
10
42
1.72
18367--18714
138
2.5
139
84
5
427
36
10
8
43
1.70
21837--21901
32
2.1
32
88
2
96
44
13
6
35
1.69
22154--23682
788
2.0
776
86
4
2171
39
11
12
37
1.78
24544--24576
16
2.1
17
88
11
52
63
18
0
18
1.31

Tables:   1

The End!